RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCDC137Q6PK04 289 aaKnown RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 EXOC4Q96A65 974 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 SDCCAG3Q96C92 435 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 KLHL11Q9NVR0 708 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 ODC1P11926 461 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 GOLGA7BQ2TAP0 167 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 SEZ6Q53EL9 994 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 KCNB2Q92953 911 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 VPS11Q9H270 941 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 RPLP2P05387 115 aaKnown RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 VIL1P09327 827 aaKnown RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 GALCP54803 685 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 DEUP1Q05D60 604 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 RCOR2Q8IZ40 523 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 TTC8Q8TAM2 541 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 GRAP2O75791 330 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 HSPA4LO95757 839 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 PGM5Q15124 567 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 UBA3Q8TBC4 463 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 PLAAQ9Y263 795 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 PI4K2BG5E9Z4 385 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 CYP2C8P10632 490 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 CASP8Q14790 479 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 GPAT2Q6NUI2 795 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 PPM1NQ8N819 430 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 SLC35G2Q8TBE7 412 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 SLITRK1Q96PX8 696 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 IL17RBQ9NRM6 502 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP3-204ENST00000540797 ATP11BQ9Y2G3 1177 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 FAN1Q9Y2M0 1017 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 RSPH10B2B2RC85 870 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 RSPH10BP0C881 870 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 GTF2A1P52655 376 aaPredicted RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 RAPGEF5Q92565 580 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 SEPT8Q92599 483 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 HDAC6Q9UBN7 1215 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 H3BRB1 525 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 HOXA2O43364 376 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 GTF2H1P32780 548 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 OAZ1P54368 228 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 PDIA2Q13087 525 aaKnown RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 MPZL3Q6UWV2 235 aa14.89□□□□□ -0.03
USP3-204ENST00000540797 TUT1Q9H6E5 874 aaKnown RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 SUDS3Q9H7L9 328 aaPredicted RBP14.89□□□□□ -0.03
USP3-204ENST00000540797 KIF1AQ12756 1690 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 SSU72P8A0A1W2PR75 194 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 B3GAT3O94766 335 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 FAM200BP0CF97 657 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 ZNF286BP0CG31 522 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 PIGHQ14442 188 aaPredicted RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 NAA25Q14CX7 972 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 MAPRE1Q15691 268 aaKnown RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 PTF1AQ7RTS3 328 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 CD302Q8IX05 232 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 RNPC3Q96LT9 517 aaKnown RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 AGPAT5Q9NUQ2 364 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 ABI2Q9NYB9 513 aaPredicted RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 NAGPAQ9UK23 515 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 FZD1Q9UP38 647 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 FAM187AA6NFU0 413 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 LRG1P02750 347 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 TGFB3P10600 412 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 NPTX2P47972 431 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 LY6KQ17RY6 165 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 ZFPM1Q8IX07 1006 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 SLC7A14Q8TBB6 771 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 ASAP3Q8TDY4 903 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 TTC17Q96AE7 1141 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 SNF8Q96H20 258 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 GPRC5DQ9NZD1 345 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 UBA6A0AVT1 1052 aaPredicted RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 TAL1P17542 331 aaPredicted RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 ADORA2AP29274 412 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 NCF2P19878 526 aaPredicted RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 NR1D1P20393 614 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 YY1P25490 414 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 PAN2Q504Q3 1202 aaKnown RBP14.88□□□□□ -0.03
USP3-204ENST00000540797 KDELC2Q7Z4H8 507 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 RASSF3Q86WH2 238 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 CHP1Q99653 195 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 CAPN7Q9Y6W3 813 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 ITIH6Q6UXX5 1313 aa14.88□□□□□ -0.03
USP3-204ENST00000540797 EEF2KO00418 725 aaKnown RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 MTF1Q14872 753 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 HP1BP3Q5SSJ5 553 aaPredicted RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 SOCS4Q8WXH5 440 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 N4BP2L2Q92802 583 aaPredicted RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 TMEM117Q9H0C3 514 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 ARSEP51690 589 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 OCRLQ01968 901 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 DCAF6Q58WW2 860 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 EFHC1Q5JVL4 640 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 IZUMO3Q5VZ72 239 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 IL31Q6EBC2 164 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 C4orf19Q8IY42 314 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 ZBED8Q8IZ13 594 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 ATPAF2Q8N5M1 289 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 DPF3Q92784 378 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 MUC3BQ9H195 1237 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms