RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TMEM117Q9H0C3 514 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 IKZF4Q9H2S9 585 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 LMCD1Q9NZU5 365 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 PCDHB13Q9Y5F0 798 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 TRIOO75962 3097 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 LRRC53A6NM62 1247 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 PPP1R37O75864 691 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 URI1O94763 535 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 ERLIN2O94905 339 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 RB1P06400 928 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 IRS1P35568 1242 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 CYLC1P35663 651 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 ARHGAP25P42331 645 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 CASP4P49662 377 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 RBM10P98175 930 aaKnown RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 NFIL3Q16649 462 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 TCEAL5Q5H9L2 206 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 UBXN11Q5T124 520 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 RRAGAQ7L523 313 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 CACNA2D4Q7Z3S7 1137 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 MCPH1Q8NEM0 835 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 SPPL3Q8TCT6 385 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 CRACR2AQ9BSW2 395 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 LSM14BQ9BX40 385 aaKnown RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 STRA6Q9BX79 667 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 METTL14Q9HCE5 456 aaKnown RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 CEP72Q9P209 647 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 LARSQ9P2J5 1176 aaKnown RBP12.92□□□□□ -0.34
CLIP1-208ENST00000537004 THEGQ9P2T0 379 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 INPP5FQ9Y2H2 1132 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 HES2Q9Y543 173 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 PCDHB2Q9Y5E7 798 aa12.92□□□□□ -0.34
CLIP1-208ENST00000537004 K7ENM7 598 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 NOL4O94818 638 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 EOMESO95936 686 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 ABL1P00519 1130 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 ARF4P18085 180 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 KCNQ1P51787 676 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 TFDP1Q14186 410 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 PTPROQ16827 1216 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 HS2ST1Q7LGA3 356 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 TRAIPQ9BWF2 469 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 GBP3Q9H0R5 595 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 RNF39Q9H2S5 420 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 RWDD3Q9Y3V2 267 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 EIF3CLB5ME19 914 aaKnown RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 NT5C1B-RDH14C9J2C7 533 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 AFPP02771 609 aaKnown RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 PLEKP08567 350 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 PLS3P13797 630 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 KRT83P78385 493 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 NCBP1Q09161 790 aaKnown RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 DCAF17Q5H9S7 520 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 ZNF569Q5MCW4 686 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 PDXDC1Q6P996 788 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 AGMOQ6ZNB7 445 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 IFNLR1Q8IU57 520 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 COLGALT1Q8NBJ5 622 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 POF1BQ8WVV4 589 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 DRC1Q96MC2 740 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 EIF3CQ99613 913 aaKnown RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 TIPINQ9BVW5 301 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 PLVAPQ9BX97 442 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 COL25A1Q9BXS0 654 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-208ENST00000537004 AGPAT3Q9NRZ7 376 aa12.91□□□□□ -0.34
CLIP1-208ENST00000537004 DLL1O00548 723 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 B4GALT3O60512 393 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 IPO7O95373 1038 aaKnown RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 EDN1P05305 212 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 MAPTP10636 758 aaKnown RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 PSMC2P35998 433 aaKnown RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 POU5F1BQ06416 359 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 ALCAMQ13740 583 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 NAA30Q147X3 362 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 FAM43BQ6ZT52 329 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 THNSL1Q8IYQ7 743 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 SYCP3Q8IZU3 236 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 SMG8Q8ND04 991 aaKnown RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 GOLGA5Q8TBA6 731 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 SLC35C1Q96A29 364 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 CCDC42Q96M95 316 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 HAUS4Q9H6D7 363 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 NLRC4Q9NPP4 1024 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 RNF216Q9NWF9 866 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-208ENST00000537004 ARHGAP20Q9P2F6 1191 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 PCDHB12Q9Y5F1 795 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 NCOR1O75376 2440 aa12.9□□□□□ -0.34
CLIP1-208ENST00000537004 HOXA2O43364 376 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ZNF623O75123 536 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 FGF18O76093 207 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 POLR2FP61218 127 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 APBA1Q02410 837 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 TCERG1LQ5VWI1 586 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 KCNT2Q6UVM3 1135 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 EP400NLQ6ZTU2 488 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 KIAA1328Q86T90 577 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 TMEM173Q86WV6 379 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 FAM186BQ8IYM0 893 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 LRRC43Q8N309 656 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 HLA-CQ95604 372 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms