RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TOR1AIP2Q8NFQ8 470 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 GIPC3Q8TF64 312 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 DDI1Q8WTU0 396 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 SDCCAG3Q96C92 435 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 MRRFQ96E11 262 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 SGF29Q96ES7 293 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ZNF274Q96GC6 653 aaPredicted RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 DYDC2Q96IM9 177 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 MAELQ96JY0 434 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 C8orf48Q96LL4 319 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PRMT1Q99873 361 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 ECSITQ9BQ95 431 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 TMEM109Q9BVC6 243 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 CRNKL1Q9BZJ0 848 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 CEP44Q9C0F1 390 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 C12orf10Q9HB07 376 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 AASDHPPTQ9NRN7 309 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 TLR7Q9NYK1 1049 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 SELENONQ9NZV5 590 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 UVRAGQ9P2Y5 699 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PPP1R1BQ9UD71 204 aaPredicted RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 STK39Q9UEW8 545 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 FBXL5Q9UKA1 691 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 KCNH3Q9ULD8 1083 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 RABGAP1Q9Y3P9 1069 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PNPLA7Q6ZV29 1317 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 A0A1W2PP64 1363 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 MYH13Q9UKX3 1938 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 NCAPD2Q15021 1401 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 BCL9LQ86UU0 1499 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 DLC1Q96QB1 1528 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 PNMA6EA0A0J9YXQ4 647 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 MACROD2A1Z1Q3 448 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ANKRD34BA5PLL1 514 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 GOLGA8BA8MQT2 603 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CENPBD1B2RD01 187 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 KIF28PB7ZC32 967 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 GOLGA8MH3BSY2 632 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SH2B2O14492 632 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 HGSO14964 777 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 RGS16O15492 202 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 EFSO43281 561 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ZWINTO95229 277 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 KRT6AP02538 564 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 KRT6BP04259 564 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SHBGP04278 402 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 GM2AP17900 193 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 RXRAP19793 462 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CRABP2P29373 138 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ATP5DP30049 168 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SLC16A2P36021 539 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CETN2P41208 172 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 IARSP41252 1262 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 EPS15P42566 896 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 GSSP48637 474 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 EIF2B2P49770 351 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 CCR3P51677 355 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 KIF11P52732 1056 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 POLGP54098 1239 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 NUP107P57740 925 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 NAA20P61599 178 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 COG7P83436 770 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 POU5F1Q01860 360 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 RNASELQ05823 741 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 ASPHQ12797 758 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 AIMP1Q12904 312 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 IKQ13123 557 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 TTF1Q15361 905 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 CYTH1Q15438 398 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CNGA2Q16280 664 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ZC2HC1CQ53FD0 456 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 HSP90AA4PQ58FG1 418 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TTC39AQ5SRH9 613 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TMTC4Q5T4D3 741 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 C6orf183Q5T699 404 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 RWDD4Q6NW29 188 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 NFRKBQ6P4R8 1299 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SHC4Q6S5L8 630 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 C4orf50Q6ZRC1 276 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 PTF1AQ7RTS3 328 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TMC3Q7Z5M5 1100 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 NET1Q7Z628 596 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 C14orf80Q86SX3 495 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ANKLE2Q86XL3 938 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 FOXP4Q8IVH2 680 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 SPARTQ8N0X7 666 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 THEMISQ8N1K5 641 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 DCLK2Q8N568 766 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ALLCQ8N6M5 410 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SPATA5Q8NB90 893 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 OR2W6PQ8NHA6 318 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TTC8Q8TAM2 541 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SPATA20Q8TB22 786 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 MDM1Q8TC05 714 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CALML6Q8TD86 181 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 DDX54Q8TDD1 881 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 NRG4Q8WWG1 115 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ATL1Q8WXF7 558 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CCDC127Q96BQ5 260 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 HSPBAP1Q96EW2 488 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms