RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 RBSNQ9H1K0 784 aa14.84□□□□□ -0.03
CD44-224ENST00000526669 CWH43Q9H720 699 aa14.84□□□□□ -0.03
CD44-224ENST00000526669 INTS13Q9NVM9 706 aa14.84□□□□□ -0.03
CD44-224ENST00000526669 DPP3Q9NY33 737 aa14.84□□□□□ -0.03
CD44-224ENST00000526669 UBQLN1Q9UMX0 589 aaKnown RBP14.84□□□□□ -0.03
CD44-224ENST00000526669 COLQQ9Y215 455 aaPredicted RBP14.84□□□□□ -0.03
CD44-224ENST00000526669 YBX2Q9Y2T7 364 aaKnown RBP14.84□□□□□ -0.03
CD44-224ENST00000526669 INSL6Q9Y581 213 aa14.84□□□□□ -0.03
CD44-224ENST00000526669 NT5C1B-RDH14C9J2C7 533 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 F8W810 466 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 PPEF2O14830 753 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 OR1G1P47890 313 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 MARSP56192 900 aaKnown RBP14.83□□□□□ -0.04
CD44-224ENST00000526669 TUSC3Q13454 348 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 BIRC3Q13489 604 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 KRT31Q15323 416 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 ZBTB6Q15916 424 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 SPRED2Q7Z698 418 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 FIBCD1Q8N539 461 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 CACTINQ8WUQ7 758 aaKnown RBP14.83□□□□□ -0.04
CD44-224ENST00000526669 SLC35C1Q96A29 364 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 ELMO3Q96BJ8 720 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 VPS16Q9H269 839 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 NKX2-4Q9H2Z4 354 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.83□□□□□ -0.045e-38■■■■■ 698.7
CD44-224ENST00000526669 KANSL3Q9P2N6 904 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 PRG3Q9Y2Y8 225 aaPredicted RBP14.83□□□□□ -0.04
CD44-224ENST00000526669 DERAQ9Y315 318 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 C2CD2Q9Y426 696 aa14.83□□□□□ -0.04
CD44-224ENST00000526669 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.83□□□□□ -0.04
CD44-224ENST00000526669 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 XPOTO43592 962 aaKnown RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 CLSTN1O94985 981 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 ITGB3P05106 788 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 CA3P07451 260 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 KRT19P08727 400 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 ZNF18P17022 549 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 IGFBP6P24592 240 aaPredicted RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 POLR2BP30876 1174 aaKnown RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 SLC11A1P49279 550 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 MXI1P50539 228 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 COPB1P53618 953 aaKnown RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 TPM4P67936 248 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 DSC1Q08554 894 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 KCNH2Q12809 1159 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 MAN2A1Q16706 1144 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 DUOXA2Q1HG44 320 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 CBWD6Q4V339 395 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 CBWD3Q5JTY5 395 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 CBWD5Q5RIA9 395 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 TDRD10Q5VZ19 366 aaKnown RBP14.82□□□□□ -0.04
CD44-224ENST00000526669 USP37Q86T82 979 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 COLGALT2Q8IYK4 626 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 C1orf127Q8N9H9 656 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 HASPINQ8TF76 798 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 TUBGCP2Q9BSJ2 902 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 PBX4Q9BYU1 374 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 SLC38A7Q9NVC3 462 aa14.82□□□□□ -0.04
CD44-224ENST00000526669 LINC01553A4QN01 128 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 PODXLO00592 558 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 PHACTR2O75167 634 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 AFPP02771 609 aaKnown RBP14.81□□□□□ -0.04
CD44-224ENST00000526669 C4BPAP04003 597 aaKnown RBP14.81□□□□□ -0.04
CD44-224ENST00000526669 EEF1GP26641 437 aaKnown RBP14.81□□□□□ -0.04
CD44-224ENST00000526669 FMO5P49326 533 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 CLCNKBP51801 687 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 BCAR1P56945 870 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 MYL7Q01449 175 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 PRPF38BQ5VTL8 546 aaKnown RBP14.81□□□□□ -0.04
CD44-224ENST00000526669 SV2AQ7L0J3 742 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 TRAPPC11Q7Z392 1133 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 NT5DC4Q86YG4 428 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 COLGALT1Q8NBJ5 622 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 SP7Q8TDD2 431 aaPredicted RBP14.81□□□□□ -0.04
CD44-224ENST00000526669 TMEM8AQ9HCN3 771 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 SIX4Q9UIU6 781 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 MTUS1Q9ULD2 1270 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 AGAP1Q9UPQ3 857 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 PCDHA11Q9Y5I1 949 aa14.81□□□□□ -0.04
CD44-224ENST00000526669 NRP1O14786 923 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 LRRN2O75325 713 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 VNN1O95497 513 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 HLA-DRAP01903 254 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 GALTP07902 379 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 CYP3A5P20815 502 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 PIK3CAP42336 1068 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 CLDN10P78369 228 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 ZACNQ401N2 412 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 MIIPQ5JXC2 388 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 C9orf57Q5W0N0 161 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 C3orf58Q8NDZ4 430 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 ANKRD20A12PQ8NF67 263 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 LIMA1Q9UHB6 759 aaKnown RBP14.8□□□□□ -0.04
CD44-224ENST00000526669 MSRAQ9UJ68 235 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 FAN1Q9Y2M0 1017 aa14.8□□□□□ -0.04
CD44-224ENST00000526669 STX10O60499 249 aa14.79□□□□□ -0.04
CD44-224ENST00000526669 KIF4AO95239 1232 aa14.79□□□□□ -0.04
CD44-224ENST00000526669 CST3P01034 146 aaPredicted RBP14.79□□□□□ -0.04
CD44-224ENST00000526669 ITGB1P05556 798 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms