RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 FXR1P51114 621 aaKnown RBP eCLIP6.14□□□□□ -1.43
CD44-223ENST00000526553 DSC2Q02487 901 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 PIN1Q13526 163 aaPredicted RBP6.14□□□□□ -1.43
CD44-223ENST00000526553 LY6G5CQ5SRR4 150 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 ARMC6Q6NXE6 501 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 GADL1Q6ZQY3 521 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 FITM2Q8N6M3 262 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 RNPEPQ9H4A4 650 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 MAN1C1Q9NR34 630 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 DKK2Q9UBU2 259 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 ANKRD6Q9Y2G4 727 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 KIAA0391O15091 583 aaKnown RBP6.13□□□□□ -1.43
CD44-223ENST00000526553 GRM6O15303 877 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 ABHD16AO95870 558 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 CFIP05156 583 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 POU2F2P09086 479 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 PDCP20941 246 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 EPHB1P54762 984 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 ZNF280AP59817 542 aaPredicted RBP6.13□□□□□ -1.43
CD44-223ENST00000526553 MXRA7P84157 204 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 KLF10Q13118 480 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 TSHZ3Q63HK5 1081 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 KCNV1Q6PIU1 500 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 USP45Q70EL2 814 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 IL17RDQ8NFM7 739 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 PROKR1Q8TCW9 393 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 NUP133Q8WUM0 1156 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 LARP4BQ92615 738 aaKnown RBP6.13□□□□□ -1.43
CD44-223ENST00000526553 CAMKK2Q96RR4 588 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 GSTO2Q9H4Y5 243 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 IP6K2Q9UHH9 426 aa6.13□□□□□ -1.43
CD44-223ENST00000526553 CENPVL1A0A0U1RR11 272 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 A0A1B0GTW7 788 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 CDHR4A6H8M9 788 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 SLC16A6O15403 523 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 SLPIP03973 132 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 CD1AP06126 327 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 CKBP12277 381 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 THEMIS2Q5TEJ8 643 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 MAPKAPK5Q8IW41 473 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 ARHGEF19Q8IW93 802 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 ULK2Q8IYT8 1036 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 NEU4Q8WWR8 484 aaPredicted RBP6.12□□□□□ -1.43
CD44-223ENST00000526553 SORCS2Q96PQ0 1159 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 PRRX2Q99811 253 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 MLST8Q9BVC4 326 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 POLHQ9Y253 713 aa6.12□□□□□ -1.43
CD44-223ENST00000526553 AKAP10O43572 662 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 PRSS23O95084 383 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 NDUFA10O95299 355 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 ARIH2O95376 493 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 ELANEP08246 267 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 PF4V1P10720 104 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 MALP21145 153 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 DDX6P26196 483 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-223ENST00000526553 SLC6A4P31645 630 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 OCA2Q04671 838 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 FHL2Q14192 279 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 PTPAQ15257 358 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 PLEKHG6Q3KR16 790 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 C3orf20Q8ND61 904 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 CPEB3Q8NE35 698 aaKnown RBP6.11□□□□□ -1.43
CD44-223ENST00000526553 ADAM2Q99965 735 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 PACSIN1Q9BY11 444 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 RHOBTB2Q9BYZ6 727 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 GTPBP4Q9BZE4 634 aaKnown RBP6.11□□□□□ -1.43
CD44-223ENST00000526553 JKAMPQ9P055 326 aa6.11□□□□□ -1.43
CD44-223ENST00000526553 ING1Q9UK53 422 aaPredicted RBP6.11□□□□□ -1.43
CD44-223ENST00000526553 PNMA8BQ9ULN7 279 aaPredicted RBP6.11□□□□□ -1.43
CD44-223ENST00000526553 LPXNO60711 386 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 SLC43A1O75387 559 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 SBK3P0C264 359 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 CT47B1P0C2W7 299 aaPredicted RBP6.1□□□□□ -1.43
CD44-223ENST00000526553 FTH1P19P0C7X4 201 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 FGFR4P22455 802 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 SLFN5Q08AF3 891 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 KHDC1Q4VXA5 237 aaKnown RBP6.1□□□□□ -1.43
CD44-223ENST00000526553 ODR4Q5SWX8 454 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 SLC4A10Q6U841 1118 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 ZNF365Q70YC5 407 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 ZNF627Q7L945 461 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 CATIPQ7Z7H3 387 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 ANKRD13AQ8IZ07 590 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 TMEM132CQ8N3T6 1108 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 TBC1D15Q8TC07 691 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 RGMAQ96B86 450 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 PNKPQ96T60 521 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 VRK1Q99986 396 aaPredicted RBP6.1□□□□□ -1.43
CD44-223ENST00000526553 ZSWIM1Q9BR11 485 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 CDH19Q9H159 772 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 SIDT1Q9NXL6 827 aaKnown RBP6.1□□□□□ -1.43
CD44-223ENST00000526553 KCNE5Q9UJ90 142 aa6.1□□□□□ -1.43
CD44-223ENST00000526553 NT5C1B-RDH14C9J2C7 533 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 CDKL5O76039 1030 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 RAB27AP51159 221 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 HK3P52790 923 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 NOMO3P69849 1222 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 GUCY1B3Q02153 619 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 RESTQ13127 1097 aa6.09□□□□□ -1.43
CD44-223ENST00000526553 SNAPC2Q13487 334 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms