RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CCDC43Q96MW1 224 aaKnown RBP15.7■□□□□ 0.1
CPSF1-201ENST00000526271 ACO2Q99798 780 aaKnown RBP15.7■□□□□ 0.1
CPSF1-201ENST00000526271 OSBPL6Q9BZF3 934 aa15.7■□□□□ 0.1
CPSF1-201ENST00000526271 BHMT2Q9H2M3 363 aa15.7■□□□□ 0.1
CPSF1-201ENST00000526271 BRMS1Q9HCU9 246 aa15.7■□□□□ 0.1
CPSF1-201ENST00000526271 PRMT8Q9NR22 394 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-201ENST00000526271 FBXO4Q9UKT5 387 aa15.7■□□□□ 0.1
CPSF1-201ENST00000526271 MRPS23Q9Y3D9 190 aaKnown RBP15.7■□□□□ 0.1
CPSF1-201ENST00000526271 ZFHX4Q86UP3 3567 aa15.7■□□□□ 0.1
CPSF1-201ENST00000526271 MYH11P35749 1972 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 ARHGEF35A5YM69 484 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 XYLBO75191 536 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 OSTNP61366 133 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 CSTF1Q05048 431 aaKnown RBP15.69■□□□□ 0.1
CPSF1-201ENST00000526271 GRM2Q14416 872 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 RSPO4Q2I0M5 234 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-201ENST00000526271 DCAF4L1Q3SXM0 396 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 FAM78AQ5JUQ0 283 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 DGLUCYQ7Z3D6 616 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 HS6ST3Q8IZP7 471 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 DEPTORQ8TB45 409 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 SHDQ96IW2 340 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 MMTAG2Q9BU76 263 aaKnown RBP15.69■□□□□ 0.1
CPSF1-201ENST00000526271 RUSC1Q9BVN2 902 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 HAPLN2Q9GZV7 340 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 PARD6AQ9NPB6 346 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 ARHGAP28Q9P2N2 729 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 TNFSF13BQ9Y275 285 aa15.69■□□□□ 0.1
CPSF1-201ENST00000526271 TSC2P49815 1807 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 KIF26AQ9ULI4 1882 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-201ENST00000526271 E9PMD0 336 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 GJA1P17302 382 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 GRM5P41594 1212 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 NPTX2P47972 431 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 MTAPQ13126 283 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 GAS6Q14393 721 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 ANKRD1Q15327 319 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 ZNF461Q8TAF7 563 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 ADPGKQ9BRR6 497 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 TARS2Q9BW92 718 aaKnown RBP15.68■□□□□ 0.1
CPSF1-201ENST00000526271 CRISPLD1Q9H336 500 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 CEP72Q9P209 647 aa15.68■□□□□ 0.1
CPSF1-201ENST00000526271 USP24Q9UPU5 2620 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 ARNTLO00327 626 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 PODXLO00592 558 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 CDC25AP30304 524 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 NEK4P51957 841 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 PUM1Q14671 1186 aaKnown RBP eCLIP15.67■□□□□ 0.1
CPSF1-201ENST00000526271 SEZ6Q53EL9 994 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 PDXDC1Q6P996 788 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 ZC3H14Q6PJT7 736 aaKnown RBP15.67■□□□□ 0.1
CPSF1-201ENST00000526271 VITQ6UXI7 678 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 ANKS3Q6ZW76 656 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 MAP4K3Q8IVH8 894 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 TCEAL8Q8IYN2 117 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 ELSPBP1Q96BH3 223 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 LRRC3Q9BY71 257 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 BCO2Q9BYV7 579 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 EPC1Q9H2F5 836 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 GDE1Q9NZC3 331 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 FBXL5Q9UKA1 691 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 KIAA1024Q9UPX6 916 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 SDK1Q7Z5N4 2213 aa15.67■□□□□ 0.1
CPSF1-201ENST00000526271 CNOT1A5YKK6 2376 aaKnown RBP15.67■□□□□ 0.1
CPSF1-201ENST00000526271 LAMTOR5O43504 91 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 KINO60870 393 aaKnown RBP15.66■□□□□ 0.1
CPSF1-201ENST00000526271 ATF2P15336 505 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 KCNE1P15382 129 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 CCT6AP40227 531 aaKnown RBP15.66■□□□□ 0.1
CPSF1-201ENST00000526271 RPS9P46781 194 aaKnown RBP15.66■□□□□ 0.1
CPSF1-201ENST00000526271 FXR2P51116 673 aaKnown RBP eCLIP15.66■□□□□ 0.11e-6■■□□□ 13.5
CPSF1-201ENST00000526271 PEX3P56589 373 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 TMEM132AQ24JP5 1023 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 SLC10A6Q3KNW5 377 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 TTC38Q5R3I4 469 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 ZBTB41Q5SVQ8 909 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 RTL10Q7L3V2 364 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 IGSF22Q8N9C0 903 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 UROC1Q96N76 676 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 ASB16Q96NS5 453 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 LRRC3BQ96PB8 259 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 CORO1BQ9BR76 489 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 DDX19AQ9NUU7 478 aaKnown RBP15.66■□□□□ 0.1
CPSF1-201ENST00000526271 C2orf42Q9NWW7 574 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 CNTN3Q9P232 1028 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 TUBGCP4Q9UGJ1 667 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 SMG5Q9UPR3 1016 aaKnown RBP15.66■□□□□ 0.1
CPSF1-201ENST00000526271 INSL5Q9Y5Q6 135 aa15.66■□□□□ 0.1
CPSF1-201ENST00000526271 SPTLC1O15269 473 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 HIP1RO75146 1068 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 PTPN2P17706 415 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 VIPR2P41587 438 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 EFNA5P52803 228 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 ATXN1P54253 815 aaKnown RBP15.65■□□□□ 0.1
CPSF1-201ENST00000526271 EPHA5P54756 1037 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 PFKPQ01813 784 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 DMWDQ09019 674 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 PPP2R5AQ15172 486 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 C1orf186Q6ZWK4 172 aa15.65■□□□□ 0.1
CPSF1-201ENST00000526271 CCDC83Q8IWF9 413 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms