RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TMEM130Q8N3G9 435 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 COLGALT1Q8NBJ5 622 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 PARD3BQ8TEW8 1205 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 ZMAT2Q96NC0 199 aaKnown RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 ZNF558Q96NG5 402 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 SAMD11Q96NU1 681 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 TAB2Q9NYJ8 693 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 ARMCX3Q9UH62 379 aaPredicted RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 LIMA1Q9UHB6 759 aaKnown RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 PCDHB12Q9Y5F1 795 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 CASTOR2A6NHX0 329 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 NT5C1B-RDH14C9J2C7 533 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 NFICP08651 508 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 KCNE1P15382 129 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 BMPR1AP36894 532 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 OR1G1P47890 313 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 ALDH7A1P49419 539 aaKnown RBP16.58■□□□□ 0.24
LSM1-203ENST00000520755 VAMP7P51809 220 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 CLDN10P78369 228 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 ENPEPQ07075 957 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 DSC1Q08554 894 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 TUSC3Q13454 348 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 LMBRD2Q68DH5 695 aaPredicted RBP16.58■□□□□ 0.24
LSM1-203ENST00000520755 COLGALT2Q8IYK4 626 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 FBXO22Q8NEZ5 403 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 TMC2Q8TDI7 906 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 CCDC127Q96BQ5 260 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 KIF12Q96FN5 646 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 PPP1R10Q96QC0 940 aaKnown RBP16.58■□□□□ 0.24
LSM1-203ENST00000520755 POP1Q99575 1024 aaKnown RBP16.58■□□□□ 0.24
LSM1-203ENST00000520755 CGRRF1Q99675 332 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 METTL14Q9HCE5 456 aaKnown RBP16.58■□□□□ 0.24
LSM1-203ENST00000520755 CACNG4Q9UBN1 327 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 CHD9Q3L8U1 2897 aa16.58■□□□□ 0.24
LSM1-203ENST00000520755 IL18RAPO95256 599 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 GALTP07902 379 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 MTIF2P46199 727 aaKnown RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 SLC11A1P49279 550 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 COPB1P53618 953 aaKnown RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 PPP3CAQ08209 521 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 NAB2Q15742 525 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 MAN2A1Q16706 1144 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 DCAF17Q5H9S7 520 aaPredicted RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 JADE1Q6IE81 842 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 Q7L0L9 218 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 CD302Q8IX05 232 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 OR5B17Q8NGF7 314 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 ZNF516Q92618 1163 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 RABGGTAQ92696 567 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 C18orf25Q96B23 403 aaPredicted RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 TMEM175Q9BSA9 504 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 TUBGCP2Q9BSJ2 902 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 ASB7Q9H672 318 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 GOLGA2P5Q9HBQ8 144 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 SLC38A7Q9NVC3 462 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 INTS13Q9NVM9 706 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 MAGEC2Q9UBF1 373 aaPredicted RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 TUBGCP4Q9UGJ1 667 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 PRG3Q9Y2Y8 225 aaPredicted RBP16.57■□□□□ 0.24
LSM1-203ENST00000520755 CDH23Q9H251 3354 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 MYO9BQ13459 2157 aa16.57■□□□□ 0.24
LSM1-203ENST00000520755 CHD7Q9P2D1 2997 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 EPOPA6NHQ4 379 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 RFXAPO00287 272 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 NRP1O14786 923 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 ALDH2P05091 517 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 DLATP10515 647 aaKnown RBP16.56■□□□□ 0.24
LSM1-203ENST00000520755 KRT13P13646 458 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 FANCCQ00597 558 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 SOX4Q06945 474 aaPredicted RBP16.56■□□□□ 0.24
LSM1-203ENST00000520755 HSP90AA2PQ14568 343 aaPredicted RBP16.56■□□□□ 0.24
LSM1-203ENST00000520755 GRIN2CQ14957 1233 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 TMEM132DQ14C87 1099 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 SCARA3Q6AZY7 606 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 GPR153Q6NV75 609 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 KLHL23Q8NBE8 558 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 GDPD5Q8WTR4 605 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 PAAF1Q9BRP4 392 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 C11orf84Q9BUA3 381 aaPredicted RBP16.56■□□□□ 0.24
LSM1-203ENST00000520755 PLVAPQ9BX97 442 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 PRDM12Q9H4Q4 367 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 SPG21Q9NZD8 308 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 FAN1Q9Y2M0 1017 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 ATG2AQ2TAZ0 1938 aa16.56■□□□□ 0.24
LSM1-203ENST00000520755 VWA8A3KMH1 1905 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 LRRC10BA6NIK2 292 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 C5orf67F2Z3F1 127 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 FGF18O76093 207 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 RB1P06400 928 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 GUCY2FP51841 1108 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 TPM4P67936 248 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 GPM6BQ13491 265 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 ZBTB6Q15916 424 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 CBWD6Q4V339 395 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 CBWD3Q5JTY5 395 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 CBWD5Q5RIA9 395 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 TCERG1LQ5VWI1 586 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 C15orf39Q6ZRI6 1047 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 TMEM173Q86WV6 379 aaPredicted RBP16.55■□□□□ 0.24
LSM1-203ENST00000520755 CREBRFQ8IUR6 639 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms