RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 PRPF38BQ5VTL8 546 aaKnown RBP23.51■■□□□ 1.35
C9orf3-222ENST00000496567 FAM109BQ6ICB4 259 aaPredicted RBP23.51■■□□□ 1.35
C9orf3-222ENST00000496567 COLGALT2Q8IYK4 626 aa23.51■■□□□ 1.35
C9orf3-222ENST00000496567 ZNF516Q92618 1163 aa23.51■■□□□ 1.35
C9orf3-222ENST00000496567 DDX27Q96GQ7 796 aaKnown RBP23.51■■□□□ 1.35
C9orf3-222ENST00000496567 TMEM8AQ9HCN3 771 aa23.51■■□□□ 1.35
C9orf3-222ENST00000496567 ITGA11Q9UKX5 1188 aa23.51■■□□□ 1.35
C9orf3-222ENST00000496567 GRXCR1A8MXD5 290 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 N4BP1O75113 896 aaKnown RBP23.5■■□□□ 1.35
C9orf3-222ENST00000496567 LRPAP1P30533 357 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 GCLMP48507 274 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 SOX4Q06945 474 aaPredicted RBP23.5■■□□□ 1.35
C9orf3-222ENST00000496567 PPP3CAQ08209 521 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 KCNH2Q12809 1159 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 KRT39Q6A163 491 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 TRAPPC11Q7Z392 1133 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 GAS2L3Q86XJ1 694 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 TMEM175Q9BSA9 504 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 CWH43Q9H720 699 aa23.5■■□□□ 1.35
C9orf3-222ENST00000496567 LIMA1Q9UHB6 759 aaKnown RBP23.5■■□□□ 1.35
C9orf3-222ENST00000496567 R3HCC1Q9Y3T6 440 aaKnown RBP23.5■■□□□ 1.35
C9orf3-222ENST00000496567 LRRC10BA6NIK2 292 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 ZC3H11AO75152 810 aaKnown RBP eCLIP23.49■■□□□ 1.35
C9orf3-222ENST00000496567 PHACTR2O75167 634 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 AFPP02771 609 aaKnown RBP23.49■■□□□ 1.35
C9orf3-222ENST00000496567 C4BPAP04003 597 aaKnown RBP23.49■■□□□ 1.35
C9orf3-222ENST00000496567 ATP1A3P13637 1013 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 MXI1P50539 228 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 BIRC3Q13489 604 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 KRT31Q15323 416 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 RAB30Q15771 203 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 ZACNQ401N2 412 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 SV2AQ7L0J3 742 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 C1orf127Q8N9H9 656 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 MMRN2Q9H8L6 949 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 GOLGA2P5Q9HBQ8 144 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 AAASQ9NRG9 546 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 MSRAQ9UJ68 235 aa23.49■■□□□ 1.35
C9orf3-222ENST00000496567 MRPL42Q9Y6G3 142 aaKnown RBP23.49■■□□□ 1.35
C9orf3-222ENST00000496567 CASTOR2A6NHX0 329 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 ALDH2P05091 517 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 LAG3P18627 525 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 FMO5P49326 533 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 ALDH7A1P49419 539 aaKnown RBP23.48■■□□□ 1.35
C9orf3-222ENST00000496567 VWA3BQ502W6 1294 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 DNAJB4Q9UDY4 337 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 ITGB3P05106 788 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 OR1G1P47890 313 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 GUCY2FP51841 1108 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 RBP5P82980 135 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 CETN1Q12798 172 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 TDRD10Q5VZ19 366 aaKnown RBP23.48■■□□□ 1.35
C9orf3-222ENST00000496567 C15orf39Q6ZRI6 1047 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 CLP1Q92989 425 aaKnown RBP23.48■■□□□ 1.35
C9orf3-222ENST00000496567 RBSNQ9H1K0 784 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 NDST4Q9H3R1 872 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 TAB2Q9NYJ8 693 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 HCSTQ9UBK5 93 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 FAN1Q9Y2M0 1017 aa23.48■■□□□ 1.35
C9orf3-222ENST00000496567 ANO9A1A5B4 782 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 LCHNA4D1U4 455 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 PODXLO00592 558 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 PMM2O15305 246 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 P4HA2O15460 535 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 B4GALT3O60512 393 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 KRT19P08727 400 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 CLCNKBP51801 687 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 BCAR1P56945 870 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 TRPC3Q13507 836 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 UPP1Q16831 310 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 C9orf57Q5W0N0 161 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 FAM84AQ96KN4 292 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 ZNF558Q96NG5 402 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 PBX4Q9BYU1 374 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 COLQQ9Y215 455 aaPredicted RBP23.47■■□□□ 1.35
C9orf3-222ENST00000496567 RWDD3Q9Y3V2 267 aa23.47■■□□□ 1.35
C9orf3-222ENST00000496567 PES1O00541 588 aaKnown RBP23.46■■□□□ 1.35
C9orf3-222ENST00000496567 GALTP07902 379 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 COPB1P53618 953 aaKnown RBP23.46■■□□□ 1.35
C9orf3-222ENST00000496567 SMAD3P84022 425 aaKnown RBP23.46■■□□□ 1.35
C9orf3-222ENST00000496567 CBWD6Q4V339 395 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 CBWD3Q5JTY5 395 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 MIIPQ5JXC2 388 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 CBWD5Q5RIA9 395 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 DCLRE1AQ6PJP8 1040 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 COLEC11Q9BWP8 271 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 VPS16Q9H269 839 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 SIX4Q9UIU6 781 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 AGAP1Q9UPQ3 857 aa23.46■■□□□ 1.35
C9orf3-222ENST00000496567 PIRO00625 290 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 NRP1O14786 923 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 SERPINC1P01008 464 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 CA3P07451 260 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 MYOGP15173 224 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 POLR2BP30876 1174 aaKnown RBP23.45■■□□□ 1.34
C9orf3-222ENST00000496567 PNPLA4P41247 253 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 SLC11A1P49279 550 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 MYL7Q01449 175 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 KCNT2Q6UVM3 1135 aa23.45■■□□□ 1.34
C9orf3-222ENST00000496567 LRRC52Q8N7C0 313 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms