RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SLC16A3O15427 465 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 PIAS1O75925 651 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 ZWINTO95229 277 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 SETSIPP0DME0 302 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 C1QTNF12Q5T7M4 302 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 FYB2Q5VWT5 728 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 DPY19L2Q6NUT2 758 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 C3orf67Q6ZVT6 689 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 MYLK4Q86YV6 388 aaPredicted RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 RBM15Q96T37 977 aaKnown RBP eCLIP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 NUP85Q9BW27 656 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 GPCPD1Q9NPB8 672 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 DDX43Q9NXZ2 648 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 R3HDM2Q9Y2K5 976 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 USP1O94782 785 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 OR6B1O95007 311 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 PSMC2P35998 433 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 MAGEA4P43358 317 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 ZBTB16Q05516 673 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 LRRC36Q1X8D7 754 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 TTC7BQ86TV6 843 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 RBM17Q96I25 401 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 DNAJC1Q96KC8 554 aaKnown RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 FAM161BQ96MY7 647 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 HEMGNQ9BXL5 484 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 RIOX1Q9H6W3 641 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 UBE2TQ9NPD8 197 aaPredicted RBP12.41□□□□□ -0.42
HDAC4-210ENST00000493582 CLIC5Q9NZA1 410 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 CHMP2BQ9UQN3 213 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 UMODL1Q5DID0 1318 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 NUP98P52948 1817 aa12.41□□□□□ -0.42
HDAC4-210ENST00000493582 FSCN2O14926 492 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 PRPF4O43172 522 aaKnown RBP eCLIP12.4□□□□□ -0.423e-6■■■□□ 15.5
HDAC4-210ENST00000493582 HNRNPCL1O60812 293 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 OPHN1O60890 802 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ESRRAP11474 423 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ADRA1DP25100 572 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 PGM1P36871 562 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 CYP2J2P51589 502 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 DSG1Q02413 1049 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 PTK6Q13882 451 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 KIF22Q14807 665 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 MARK2Q7KZI7 788 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 FBXO33Q7Z6M2 555 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 SPATA24Q86W54 205 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ZNF564Q8TBZ8 553 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 CNKSR2Q8WXI2 1034 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 SLCO2A1Q92959 643 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 FAM163AQ96GL9 167 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ECSITQ9BQ95 431 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 LRRC4BQ9NT99 713 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ARMCX1Q9P291 453 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 HSFX1Q9UBD0 423 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ZMYM2Q9UBW7 1377 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 NMT1P30419 496 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 IL6STP40189 918 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 EIF6P56537 245 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 CYP4A11Q02928 519 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 NR1H3Q13133 447 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 TTLL12Q14166 644 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 DDB1Q16531 1140 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 SPDYAQ5MJ70 313 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 PHLDB2Q86SQ0 1253 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 CADPS2Q86UW7 1296 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 FBXO27Q8NI29 283 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 MAK16Q9BXY0 300 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ANKFY1Q9P2R3 1169 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ROBO3Q96MS0 1386 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 NHSL1Q5SYE7 1610 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 KIF13BQ9NQT8 1826 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 GAS8O95995 478 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 TROVE2P10155 538 aaKnown RBP eCLIP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 ANPEPP15144 967 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 KRT4P19013 534 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 GRIA2P42262 883 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 FASTKD3Q14CZ7 662 aaKnown RBP12.4□□□□□ -0.42
HDAC4-210ENST00000493582 DBN1Q16643 649 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 DAB2IPQ5VWQ8 1189 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 IZUMO3Q5VZ72 239 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 OLFML2BQ68BL8 750 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 LRRC6Q86X45 466 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 NAT14Q8WUY8 206 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 CLPTM1LQ96KA5 538 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 EBF3Q9H4W6 596 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 SAYSD1Q9NPB0 183 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 DNM3Q9UQ16 869 aa12.4□□□□□ -0.42
HDAC4-210ENST00000493582 SHANK3Q9BYB0 1731 aa12.4□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L15C9J2P7 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L13C9JLJ4 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L11C9JVI0 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L18D6R9N7 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L22D6RA61 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L17D6RBQ6 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L19D6RCP7 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 USP17L20D6RJB6 530 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 SORBS3O60504 671 aa12.39□□□□□ -0.43
HDAC4-210ENST00000493582 PPP1R11O60927 126 aaPredicted RBP12.39□□□□□ -0.43
HDAC4-210ENST00000493582 CDK8P49336 464 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms