RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RAD51CO43502 376 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 PEX10O60683 326 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 HEXIM1O94992 359 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 SYF2O95926 243 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 EDN1P05305 212 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 DLATP10515 647 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 CYP2C19P33261 490 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CTNNA1P35221 906 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 PTENP60484 403 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CENPCQ03188 943 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 LAMTOR4Q0VGL1 99 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 PTP4A2Q12974 167 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CUL2Q13617 745 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 LAMC2Q13753 1193 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 TFDP1Q14186 410 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 LY6KQ17RY6 165 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 HSDL1Q3SXM5 330 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 HSP90B2PQ58FF3 399 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 SPDYCQ5MJ68 293 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 EMC10Q5UCC4 262 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 DCAF12L1Q5VU92 463 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 ANKRD23Q86SG2 305 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 ZBTB8OSQ8IWT0 167 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 DHX37Q8IY37 1157 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 IQCKQ8N0W5 287 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 UBL4BQ8N7F7 174 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 GPRC5AQ8NFJ5 357 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CCDC26Q8TAB7 109 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 KRT12Q99456 494 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 LCMT1Q9UIC8 334 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CPSF3Q9UKF6 684 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 PCDHA3Q9Y5H8 950 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 PTCH2Q9Y6C5 1203 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 CCDC66A2RUB6 948 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 FAM187AA6NFU0 413 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 TMCO5BA8MYB1 307 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 KRIT1O00522 736 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 MAGEB2O15479 319 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 CLDN3O15551 220 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 B4GALT4O60513 344 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ZMYND10O75800 440 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ASS1P00966 412 aaKnown RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 MMEP08473 750 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 CLTAP09496 248 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 TNNI1P19237 187 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ABCB4P21439 1286 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 HSPA9P38646 679 aaKnown RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 SLC1A1P43005 524 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 LACTBP83111 547 aaPredicted RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 ARHGAP1Q07960 439 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 DHX34Q14147 1143 aaKnown RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 MAPK6Q16659 721 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 CYP1B1Q16678 543 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 TAPT1Q6NXT6 567 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 TRMT1LQ7Z2T5 733 aaKnown RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 DNAAF5Q86Y56 855 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 PHF13Q86YI8 300 aaPredicted RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 CASKIN2Q8WXE0 1202 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ZBTB45Q96K62 511 aaPredicted RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 RNPC3Q96LT9 517 aaKnown RBP11.5□□□□□ -0.57
USP4-214ENST00000491791 RUNDC3BQ96NL0 473 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ZSWIM1Q9BR11 485 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 FAM129AQ9BZQ8 928 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 KATNBL1Q9H079 304 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 GOLPH3Q9H4A6 298 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ST7Q9NRC1 585 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ERAP1Q9NZ08 941 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 CTTNBP2NLQ9P2B4 639 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ADAM21Q9UKJ8 722 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 TRPC6Q9Y210 931 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ZSWIM8A7E2V4 1837 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 PTPRJQ12913 1337 aa11.5□□□□□ -0.57
USP4-214ENST00000491791 ZNF236Q9UL36 1845 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 BTBD19C9JJ37 291 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 NOP56O00567 594 aaKnown RBP11.49□□□□□ -0.57
USP4-214ENST00000491791 OPA1O60313 960 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 PGK2P07205 417 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 TXNP10599 105 aaKnown RBP11.49□□□□□ -0.57
USP4-214ENST00000491791 HOXD10P28358 340 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 ECHS1P30084 290 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 GBP1P32455 592 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 MATR3P43243 847 aaKnown RBP eCLIP11.49□□□□□ -0.57
USP4-214ENST00000491791 CARSP49589 748 aaKnown RBP11.49□□□□□ -0.57
USP4-214ENST00000491791 ACOT2P49753 483 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 WNT7BP56706 349 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 SLC7A5Q01650 507 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 GUCY2DQ02846 1103 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 MPZL3Q6UWV2 235 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 SND1Q7KZF4 910 aaKnown RBP eCLIP11.49□□□□□ -0.57
USP4-214ENST00000491791 MCOLN2Q8IZK6 566 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 ALG3Q92685 438 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 GLG1Q92896 1179 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 SLCO2A1Q92959 643 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 SPATA33Q96N06 139 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 APOBEC3GQ9HC16 384 aaKnown RBP11.49□□□□□ -0.57
USP4-214ENST00000491791 EPB41L5Q9HCM4 733 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 FAM114A2Q9NRY5 505 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
USP4-214ENST00000491791 PCYOX1Q9UHG3 505 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms