RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 KIAA1841Q6NSI8 718 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EP400NLQ6ZTU2 488 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 C3orf58Q8NDZ4 430 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 BEST2Q8NFU1 509 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GOLGA5Q8TBA6 731 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CHST7Q9NS84 486 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 C2CD2Q9Y426 696 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 COL6A3P12111 3177 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ANK1P16157 1881 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 C2CD2LO14523 706 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CLIC2O15247 247 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 LINC01565O15544 149 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CYP2J2P51589 502 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 DSG1Q02413 1049 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ADAM15Q13444 863 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SPATA1Q5VX52 437 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CD300LGQ6UXG3 332 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 C12orf56Q8IXR9 622 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ERCC4Q92889 916 aaPredicted RBP17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SMARCE1Q969G3 411 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 B3GALT6Q96L58 329 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GSDMAQ96QA5 445 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EMILIN2Q9BXX0 1053 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KCTD10Q9H3F6 313 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KIAA1586Q9HCI6 787 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EYSQ5T1H1 3165 aa17.66■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ZNF233A6NK53 670 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TRAPPC3O43617 180 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 LILRB3O75022 631 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CLASP2O75122 1294 aaKnown RBP17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GLP2RO95838 553 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 IGFBP6P24592 240 aaPredicted RBP17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 BRCC3P46736 316 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NDUFV1P49821 464 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GUCY2FP51841 1108 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 WNT7BP56706 349 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TFF2Q03403 129 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 FAM171A1Q5VUB5 890 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KIAA0319Q5VV43 1072 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NT5DC4Q86YG4 428 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CBWD2Q8IUF1 395 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EFCAB13Q8IY85 973 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GPR65Q8IYL9 337 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TMEM130Q8N3G9 435 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 XXYLT1Q8NBI6 393 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SPATA20Q8TB22 786 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ATXN2LQ8WWM7 1075 aaKnown RBP17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 FBXL18Q96ME1 805 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GBP4Q96PP9 640 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TTPALQ9BTX7 342 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NUB1Q9Y5A7 615 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PCDHA5Q9Y5H7 936 aa17.65■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TULP1O00294 542 aaPredicted RBP17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 PDXKO00764 312 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 TBX10O75333 385 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 SRGAP2BP0DMP2 458 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 KCNA5P22460 613 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 AAK1Q2M2I8 961 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 CEP57Q86XR8 500 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 GUF1Q8N442 669 aaKnown RBP17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 VN1R2Q8NFZ6 395 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 RIN2Q8WYP3 895 aaPredicted RBP17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 KLHL5Q96PQ7 755 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 MAPK8IP1Q9UQF2 711 aa17.64■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 MYO7AQ13402 2215 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 CALUO43852 315 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 CNPP09543 421 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 KLRC2P26717 231 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 MCM4P33991 863 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 LTBRP36941 435 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 MRPS5P82675 430 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 CREMQ03060 361 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 KCNC3Q14003 757 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 SURF1Q15526 300 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 SNRNP35Q16560 246 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 RTP2Q5QGT7 225 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 ZNF658Q5TYW1 1059 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 LLGL2Q6P1M3 1020 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 PPFIBP1Q86W92 1011 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 SMYD4Q8IYR2 804 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 RDH13Q8NBN7 331 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 PIK3R5Q8WYR1 880 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 GTPBP4Q9BZE4 634 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 RXFP1Q9HBX9 757 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 PDE11AQ9HCR9 933 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 DPP3Q9NY33 737 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 HCFC2Q9Y5Z7 792 aa17.63■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 REV3LO60673 3130 aa17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 H3BQ06 376 aaPredicted RBP17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 I3L4J1 428 aa17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 EXOC3O60645 756 aa17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 ADH1AP07327 375 aa17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 FGFR3P22607 806 aa17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 TKTP29401 623 aaKnown RBP17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 RBM10P98175 930 aaKnown RBP17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 TFAMQ00059 246 aaKnown RBP17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 DLX2Q07687 328 aaPredicted RBP17.62■□□□□ 0.41
MSH5-SAPCD1-206ENST00000491552 LEXMQ3ZCV2 418 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms