RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 RPN1P04843 607 aaKnown RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 HOXB8P17481 243 aaPredicted RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 LRPAP1P30533 357 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 HOXD13P35453 343 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 SPAG1Q07617 926 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 LLGL2Q6P1M3 1020 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 CD300LGQ6UXG3 332 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 CEP57Q86XR8 500 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 FMR1NBQ8N0W7 255 aaPredicted RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 BEST2Q8NFU1 509 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 SLC22A17Q8WUG5 538 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 RIN2Q8WYP3 895 aaPredicted RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 CBWD1Q9BRT8 395 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 FNIP2Q9P278 1114 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 CGNQ9P2M7 1197 aaKnown RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 BARX2Q9UMQ3 279 aaPredicted RBP18.84■□□□□ 0.61
MDC1-206ENST00000489540 PRUNE2Q8WUY3 3088 aa18.84■□□□□ 0.61
MDC1-206ENST00000489540 C1RP00736 705 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 ADH1AP07327 375 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 FGFR3P22607 806 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 RBM10P98175 930 aaKnown RBP18.83■□□□□ 0.61
MDC1-206ENST00000489540 SMAD4Q13485 552 aaKnown RBP18.83■□□□□ 0.61
MDC1-206ENST00000489540 BMT2Q1RMZ1 405 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 SPATA1Q5VX52 437 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 JADE1Q6IE81 842 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 ANKRD54Q6NXT1 300 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 HS2ST1Q7LGA3 356 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 NT5DC4Q86YG4 428 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 PIK3R5Q8WYR1 880 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 SAAL1Q96ER3 474 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 B3GALT6Q96L58 329 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 PCIF1Q9H4Z3 704 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 KIAA1586Q9HCI6 787 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 TUBGCP4Q9UGJ1 667 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 C2CD2Q9Y426 696 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 NUB1Q9Y5A7 615 aa18.83■□□□□ 0.61
MDC1-206ENST00000489540 TEX28O15482 410 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 CLCN4P51793 760 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 FAM160A1Q05DH4 1040 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 DPYDQ12882 1025 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 STK4Q13043 487 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 TMEM132DQ14C87 1099 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 CLUL1Q15846 466 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 KNOP1Q1ED39 458 aaKnown RBP18.83■□□□□ 0.6
MDC1-206ENST00000489540 RTP2Q5QGT7 225 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 NELFCDQ8IXH7 590 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 GPD1LQ8N335 351 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 SMRP1Q8NCR6 262 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 C3orf58Q8NDZ4 430 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 ENGASEQ8NFI3 743 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 ADAMTS19Q8TE59 1207 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 DZANK1Q9NVP4 752 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 DPP7Q9UHL4 492 aa18.83■□□□□ 0.6
MDC1-206ENST00000489540 SPTBN5Q9NRC6 3674 aaKnown RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 BRWD1Q9NSI6 2320 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 TGFB1I1O43294 461 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 MBTPS2O43462 519 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 PAX3P23760 479 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 IGFBP6P24592 240 aaPredicted RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 BRCC3P46736 316 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 SNW1Q13573 536 aaKnown RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 BRSK2Q8IWQ3 736 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 GOLGA5Q8TBA6 731 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 LNX1Q8TBB1 728 aaPredicted RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 COL25A1Q9BXS0 654 aaPredicted RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 AGPAT3Q9NRZ7 376 aa18.82■□□□□ 0.6
MDC1-206ENST00000489540 RBAKQ9NYW8 714 aaPredicted RBP18.82■□□□□ 0.6
MDC1-206ENST00000489540 TDRD15B5MCY1 1934 aaKnown RBP18.81■□□□□ 0.6
MDC1-206ENST00000489540 GOLGA8IPA6NC78 632 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 ZNF233A6NK53 670 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 GOLGA8JA6NMD2 632 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 SYN3O14994 580 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 RHOBTB3O94955 611 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 KIF20AO95235 890 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 NFICP08651 508 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 PRR29P0C7W0 189 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 EPCAMP16422 314 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 KCNB1Q14721 858 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 SYCE2Q6PIF2 218 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 ELMSAN1Q6PJG2 1045 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 ANKS3Q6ZW76 656 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 FBXL18Q96ME1 805 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 TIGD1Q96MW7 591 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 UHRF1Q96T88 793 aaPredicted RBP18.81■□□□□ 0.6
MDC1-206ENST00000489540 S1PR5Q9H228 398 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 HSPBP1Q9NZL4 362 aa18.81■□□□□ 0.6
MDC1-206ENST00000489540 HOOK1Q9UJC3 728 aaKnown RBP18.81■□□□□ 0.6
MDC1-206ENST00000489540 GLUD1P00367 558 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 IL9P15248 144 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 MCM4P33991 863 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 SMAD2Q15796 467 aaKnown RBP18.8■□□□□ 0.6
MDC1-206ENST00000489540 PSMD5Q16401 504 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 PRSS55Q6UWB4 352 aaPredicted RBP18.8■□□□□ 0.6
MDC1-206ENST00000489540 C12orf56Q8IXR9 622 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 KIAA0895Q8NCT3 520 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 ZSWIM2Q8NEG5 633 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 NOC3LQ8WTT2 800 aaKnown RBP18.8■□□□□ 0.6
MDC1-206ENST00000489540 HDAC7Q8WUI4 952 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 CACTINQ8WUQ7 758 aaKnown RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms