RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KMT5AQ9NQR1 393 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 SH2B1Q9NRF2 756 aaPredicted RBP13.59□□□□□ -0.23
CPSF3-204ENST00000489403 SLC38A7Q9NVC3 462 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 CNTN3Q9P232 1028 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 DNM3Q9UQ16 869 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 MYH11P35749 1972 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 ARHGEF37A1IGU5 675 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MEFVO15553 781 aaPredicted RBP13.58□□□□□ -0.24
CPSF3-204ENST00000489403 TBC1D4O60343 1298 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 ATXN8OSP0DMR3 200 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MCF2P10911 925 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 KCNE1P15382 129 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 FOXK2Q01167 660 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 PFKPQ01813 784 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 SLC44A4Q53GD3 710 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 KRT79Q5XKE5 535 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MPZL3Q6UWV2 235 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 C1orf186Q6ZWK4 172 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 ZNF461Q8TAF7 563 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 C18orf25Q96B23 403 aaPredicted RBP13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MCRS1Q96EZ8 462 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 ACAP3Q96P50 834 aa13.58□□□□□ -0.24
CPSF3-204ENST00000489403 AVENQ9NQS1 362 aaPredicted RBP13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MRPS23Q9Y3D9 190 aaKnown RBP13.58□□□□□ -0.24
CPSF3-204ENST00000489403 MTF2Q9Y483 593 aaPredicted RBP13.58□□□□□ -0.24
CPSF3-204ENST00000489403 LAD1O00515 517 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 SYN3O14994 580 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 SLC16A4O15374 487 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 ECI2O75521 394 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 ABLIM3O94929 683 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 LRG1P02750 347 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 HARSP12081 509 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 CEBPBP17676 345 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 PRPHP41219 470 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 MRPL58Q14197 206 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 UBXN2BQ14CS0 331 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 ERICH6BQ5W0A0 696 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 ZC3H14Q6PJT7 736 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 ZBTB45Q96K62 511 aaPredicted RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 PLA2G2FQ9BZM2 168 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 C17orf75Q9HAS0 396 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 LTB4R2Q9NPC1 389 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 GDE1Q9NZC3 331 aa13.57□□□□□ -0.24
CPSF3-204ENST00000489403 RBM19Q9Y4C8 960 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 RIF1Q5UIP0 2472 aaKnown RBP13.57□□□□□ -0.24
CPSF3-204ENST00000489403 FAM170BA6NMN3 283 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 SFI1A8K8P3 1242 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 NRG2O14511 850 aaPredicted RBP13.56□□□□□ -0.24
CPSF3-204ENST00000489403 SEC24AO95486 1093 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 ATF2P15336 505 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 PTPN2P17706 415 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 CD72P21854 359 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 GUCY2CP25092 1073 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 ELF1P32519 619 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 ARPP19P56211 112 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 NOLC1Q14978 699 aaKnown RBP eCLIP13.56□□□□□ -0.24
CPSF3-204ENST00000489403 SEZ6Q53EL9 994 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 PRSS36Q5K4E3 855 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 DTHD1Q6ZMT9 781 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 TPRG1Q6ZUI0 275 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 SUSD3Q96L08 255 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 NTPCRQ9BSD7 190 aaKnown RBP13.56□□□□□ -0.24
CPSF3-204ENST00000489403 TCHPQ9BT92 498 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 TIPINQ9BVW5 301 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 BCO2Q9BYV7 579 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 OSBPL6Q9BZF3 934 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 CYP4F11Q9HBI6 524 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 ANKFY1Q9P2R3 1169 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 FBXL5Q9UKA1 691 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 NUB1Q9Y5A7 615 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 INSL5Q9Y5Q6 135 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 CACNA1IQ9P0X4 2223 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 COL4A2P08572 1712 aa13.56□□□□□ -0.24
CPSF3-204ENST00000489403 DMXL1Q9Y485 3027 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 H7C4K7 107 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 PRRG1O14668 218 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TOM1L1O75674 476 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 FCARP24071 287 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TARSP26639 723 aaKnown RBP13.55□□□□□ -0.24
CPSF3-204ENST00000489403 RPL9P32969 192 aaKnown RBP13.55□□□□□ -0.24
CPSF3-204ENST00000489403 MCM4P33991 863 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 CCR2P41597 374 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 RAD51AP2Q09MP3 1159 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 SLC10A6Q3KNW5 377 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 HYIQ5T013 277 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TANGO2Q6ICL3 276 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 ERMP1Q7Z2K6 904 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TCEAL8Q8IYN2 117 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TMEM130Q8N3G9 435 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TMEM161BQ8NDZ6 487 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 DDX12PQ92771 950 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 ELSPBP1Q96BH3 223 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TCEAL4Q96EI5 215 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 PNMA5Q96PV4 448 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 CORO1BQ9BR76 489 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 SPATA6Q9NWH7 488 aaPredicted RBP13.55□□□□□ -0.24
CPSF3-204ENST00000489403 TUBGCP4Q9UGJ1 667 aa13.55□□□□□ -0.24
CPSF3-204ENST00000489403 SHISA7A6NL88 538 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 LAMTOR5O43504 91 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms