RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 C11orf54Q9H0W9 315 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-212ENST00000488896 RNPEPQ9H4A4 650 aa6.39□□□□□ -1.39
PTPN4-212ENST00000488896 DKK2Q9UBU2 259 aa6.39□□□□□ -1.39
PTPN4-212ENST00000488896 TESQ9UGI8 421 aaKnown RBP6.39□□□□□ -1.39
PTPN4-212ENST00000488896 PACSIN3Q9UKS6 424 aa6.39□□□□□ -1.39
PTPN4-212ENST00000488896 LIMCH1Q9UPQ0 1083 aa6.39□□□□□ -1.39
PTPN4-212ENST00000488896 COL4A3BPQ9Y5P4 624 aa6.39□□□□□ -1.39
PTPN4-212ENST00000488896 CCDC154A6NI56 674 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 OVOL3O00110 214 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 ERN1O75460 977 aaKnown RBP6.38□□□□□ -1.39
PTPN4-212ENST00000488896 GPANK1O95872 356 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 ITGAMP11215 1152 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 CKBP12277 381 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 ALAS1P13196 640 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 BMP5P22003 454 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 PROZP22891 400 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 GCSHP23434 173 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 CCND1P24385 295 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 ATP8B2P98198 1209 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 UAP1L1Q3KQV9 507 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 KRTAP15-1Q3LI76 137 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 C3orf36Q3SXR2 165 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 B3GNTL1Q67FW5 361 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-212ENST00000488896 FOXR2Q6PJQ5 311 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 FITM2Q8N6M3 262 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 KAT5Q92993 513 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 MTO1Q9Y2Z2 717 aaKnown RBP6.38□□□□□ -1.39
PTPN4-212ENST00000488896 COL4A3Q01955 1670 aa6.38□□□□□ -1.39
PTPN4-212ENST00000488896 MARCH11A6NNE9 402 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 ALG1L2C9J202 215 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 HTRA2O43464 458 aaPredicted RBP6.37□□□□□ -1.39
PTPN4-212ENST00000488896 FOSP01100 380 aaPredicted RBP6.37□□□□□ -1.39
PTPN4-212ENST00000488896 WASP42768 502 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 CTXN1P60606 82 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 NOMO3P69849 1222 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 ATP2B3Q16720 1220 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 NOMO2Q5JPE7 1267 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 EFCAB2Q5VUJ9 269 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 SLC44A3Q8N4M1 653 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 DCBLD1Q8N8Z6 715 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 PCDH12Q9NPG4 1184 aa6.37□□□□□ -1.39
PTPN4-212ENST00000488896 TNKSO95271 1327 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 WASHC2CQ9Y4E1 1318 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 PIPSLA2A3N6 862 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 FZD9O00144 591 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 RHOBTB3O94955 611 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 SBK3P0C264 359 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 PLA2G5P39877 138 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 ZNF280AP59817 542 aaPredicted RBP6.36□□□□□ -1.39
PTPN4-212ENST00000488896 CXADRP78310 365 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 CDC42EP1Q00587 391 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 COL10A1Q03692 680 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 ODF1Q14990 250 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 SERPINB13Q9UIV8 391 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 IPPQ9Y573 584 aa6.36□□□□□ -1.39
PTPN4-212ENST00000488896 GRM6O15303 877 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 EDNRBP24530 442 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 AVPR1BP47901 424 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 ABHD17BQ5VST6 288 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.35□□□□□ -1.39
PTPN4-212ENST00000488896 GADL1Q6ZQY3 521 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 GPR149Q86SP6 731 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 COA7Q96BR5 231 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 CLPTM1LQ96KA5 538 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 TOR3AQ9H497 397 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 FAM30AQ9NZY2 134 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 HSFX1Q9UBD0 423 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 ZNHIT2Q9UHR6 403 aa6.35□□□□□ -1.39
PTPN4-212ENST00000488896 NUDT3O95989 172 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 HKR1P10072 659 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 SLC6A4P31645 630 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 NANOS3P60323 173 aaKnown RBP6.34□□□□□ -1.39
PTPN4-212ENST00000488896 PURAQ00577 322 aaKnown RBP6.34□□□□□ -1.39
PTPN4-212ENST00000488896 TAP1Q03518 808 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 DNAJC10Q8IXB1 793 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 NLGN4YQ8NFZ3 816 aaPredicted RBP6.34□□□□□ -1.39
PTPN4-212ENST00000488896 IFI44Q8TCB0 444 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 Q96MF0 132 aa6.34□□□□□ -1.39
PTPN4-212ENST00000488896 EPN1Q9Y6I3 576 aaPredicted RBP6.34□□□□□ -1.39
PTPN4-212ENST00000488896 HAUS5O94927 633 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 AGFG2O95081 481 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 CD1AP06126 327 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 EGR2P11161 476 aaPredicted RBP6.33□□□□□ -1.4
PTPN4-212ENST00000488896 FCER1AP12319 257 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 FOXI1Q12951 378 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 DACT2Q5SW24 774 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 UTP14CQ5TAP6 766 aaKnown RBP6.33□□□□□ -1.4
PTPN4-212ENST00000488896 ARMC6Q6NXE6 501 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 NUP133Q8WUM0 1156 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 NACC2Q96BF6 587 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 PNKPQ96T60 521 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 TLR10Q9BXR5 811 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 ASPSCR1Q9BZE9 553 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 GALNT9Q9HCQ5 603 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 CASS4Q9NQ75 786 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 SYBUQ9NX95 663 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 KCNE5Q9UJ90 142 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 CDYLQ9Y232 598 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 PCDHB1Q9Y5F3 818 aa6.33□□□□□ -1.4
PTPN4-212ENST00000488896 LMNAP02545 664 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms