RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ZNF461Q8TAF7 563 aa24.67■■□□□ 1.54
PTPN4-211ENST00000488279 KCNN1Q92952 543 aa24.67■■□□□ 1.54
PTPN4-211ENST00000488279 PLEKHA5Q9HAU0 1116 aa24.67■■□□□ 1.54
PTPN4-211ENST00000488279 BLOC1S4Q9NUP1 217 aa24.67■■□□□ 1.54
PTPN4-211ENST00000488279 CDH7Q9ULB5 785 aa24.67■■□□□ 1.54
PTPN4-211ENST00000488279 KMT2EQ8IZD2 1858 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 H0Y858 1186 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 H7C4K7 107 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 FAM13AO94988 1023 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 KRT18P05783 430 aaKnown RBP24.66■■□□□ 1.54
PTPN4-211ENST00000488279 CFHP08603 1231 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 CLTAP09496 248 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 SRFP11831 508 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 PLCG1P19174 1290 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 NTHL1P78549 312 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 KARSQ15046 597 aaKnown RBP24.66■■□□□ 1.54
PTPN4-211ENST00000488279 SLC8B1Q6J4K2 584 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 PARVGQ9HBI0 331 aa24.66■■□□□ 1.54
PTPN4-211ENST00000488279 USP34Q70CQ2 3546 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 NPR3P17342 541 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 ELF1P32519 619 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 LIG4P49917 911 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 ZNF131P52739 623 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 GRIN1Q05586 938 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 HTR4Q13639 388 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 MCM6Q14566 821 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 KYAT1Q16773 422 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 LRRC15Q8TF66 581 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 RAD54LQ92698 747 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 HAPLN2Q9GZV7 340 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 TBX20Q9UMR3 447 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 NUMBLQ9Y6R0 609 aa24.65■■□□□ 1.54
PTPN4-211ENST00000488279 STK25O00506 426 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 HNRNPDLO14979 420 aaKnown RBP24.64■■□□□ 1.54
PTPN4-211ENST00000488279 TRAK2O60296 914 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 CXCL8P10145 99 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 AOC1P19801 751 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 MCM4P33991 863 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 DDIT3P35638 169 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 CWF19L1Q69YN2 538 aaKnown RBP24.64■■□□□ 1.54
PTPN4-211ENST00000488279 APPL2Q8NEU8 664 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 FGF13Q92913 245 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 SUSD3Q96L08 255 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 RTP3Q9BQQ7 232 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 CCSER1Q9C0I3 900 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 ZHX3Q9H4I2 956 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 FAM86C1Q9NVL1 165 aa24.64■■□□□ 1.54
PTPN4-211ENST00000488279 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.64■■□□□ 1.54
PTPN4-211ENST00000488279 K7ENM7 598 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 PI15O43692 258 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 TBC1D4O60343 1298 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 ABLIM3O94929 683 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 ARPP19P56211 112 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 ROR1Q01973 937 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 MRPL58Q14197 206 aaKnown RBP24.63■■□□□ 1.53
PTPN4-211ENST00000488279 PABPC1LQ4VXU2 614 aaKnown RBP24.63■■□□□ 1.53
PTPN4-211ENST00000488279 ST13P5Q8NFI4 369 aaPredicted RBP24.63■■□□□ 1.53
PTPN4-211ENST00000488279 LARP4BQ92615 738 aaKnown RBP24.63■■□□□ 1.53
PTPN4-211ENST00000488279 HCFC1R1Q9NWW0 138 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 DNMT3BQ9UBC3 853 aaKnown RBP24.63■■□□□ 1.53
PTPN4-211ENST00000488279 TUBGCP4Q9UGJ1 667 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 KCNH3Q9ULD8 1083 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 CLIC4Q9Y696 253 aa24.63■■□□□ 1.53
PTPN4-211ENST00000488279 TRIP11Q15643 1979 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 TTC26A0AVF1 554 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 PRRG1O14668 218 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 TBCAO75347 108 aaKnown RBP24.62■■□□□ 1.53
PTPN4-211ENST00000488279 ATF2P15336 505 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 MARCKSP29966 332 aaPredicted RBP24.62■■□□□ 1.53
PTPN4-211ENST00000488279 ABCD1P33897 745 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 SPAG1Q07617 926 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 CTXN3Q4LDR2 81 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 PARM1Q6UWI2 310 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 MTSS1LQ765P7 747 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 ITFG1Q8TB96 612 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 KIF12Q96FN5 646 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 FBXL5Q9UKA1 691 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 CA14Q9ULX7 337 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 VWA8A3KMH1 1905 aa24.62■■□□□ 1.53
PTPN4-211ENST00000488279 WDR27A2RRH5 827 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 KRBA1A5PL33 1030 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 PIGRP01833 764 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 LRG1P02750 347 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 RFX1P22670 979 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 PPP2R3AQ06190 1150 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 ZBTB6Q15916 424 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 GPR152Q8TDT2 470 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 DDX12PQ92771 950 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 FGF14Q92915 247 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 EPSTI1Q96J88 318 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 RPF1Q9H9Y2 349 aaKnown RBP24.61■■□□□ 1.53
PTPN4-211ENST00000488279 SLC2A4RGQ9NR83 387 aa24.61■■□□□ 1.53
PTPN4-211ENST00000488279 MRPS23Q9Y3D9 190 aaKnown RBP24.61■■□□□ 1.53
PTPN4-211ENST00000488279 ARHGEF37A1IGU5 675 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 LACTBL1A8MY62 500 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 OGTO15294 1046 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 CYP3A5P20815 502 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 LRPAP1P30533 357 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 TNFSF9P41273 254 aa24.6■■□□□ 1.53
PTPN4-211ENST00000488279 SPECC1Q5M775 1068 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms