RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 NOMO3P69849 1222 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 PURAQ00577 322 aaKnown RBP5.27□□□□□ -1.57
VPS41-213ENST00000485955 SMN1Q16637 294 aaKnown RBP5.27□□□□□ -1.57
VPS41-213ENST00000485955 NOMO2Q5JPE7 1267 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 HECTD2Q5U5R9 776 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 COA7Q96BR5 231 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 MARS2Q96GW9 593 aaKnown RBP5.27□□□□□ -1.57
VPS41-213ENST00000485955 CYP4F11Q9HBI6 524 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 PCDH12Q9NPG4 1184 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 USP25Q9UHP3 1055 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 PCDHB1Q9Y5F3 818 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 CCDC154A6NI56 674 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 KIAA0391O15091 583 aaKnown RBP5.26□□□□□ -1.57
VPS41-213ENST00000485955 CDKL5O76039 1030 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 EGR2P11161 476 aaPredicted RBP5.26□□□□□ -1.57
VPS41-213ENST00000485955 ZNF280AP59817 542 aaPredicted RBP5.26□□□□□ -1.57
VPS41-213ENST00000485955 CTXN1P60606 82 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 HSD11B2P80365 405 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 FOXI1Q12951 378 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 PTPN21Q16825 1174 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 DACT2Q5SW24 774 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 GPR149Q86SP6 731 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 LCORLQ8N3X6 602 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 IFI44Q8TCB0 444 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 HDAC10Q969S8 669 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 TMX3Q96JJ7 454 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 DMRTA2Q96SC8 542 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 TOR3AQ9H497 397 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 TDP1Q9NUW8 608 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 SAP30BPQ9UHR5 308 aaKnown RBP5.26□□□□□ -1.57
VPS41-213ENST00000485955 COL4A3BPQ9Y5P4 624 aa5.26□□□□□ -1.57
VPS41-213ENST00000485955 CDHR4A6H8M9 788 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 ALG1L2C9J202 215 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 ZFPL1O95159 310 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 CDC42EP1Q00587 391 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 KIF23Q02241 960 aaPredicted RBP5.25□□□□□ -1.57
VPS41-213ENST00000485955 TAP1Q03518 808 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 SLFN5Q08AF3 891 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 MIGA2Q7L4E1 593 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 FITM2Q8N6M3 262 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 LINC00476Q8WZB0 136 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 KAT5Q92993 513 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 ALOXE3Q9BYJ1 711 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 ASPSCR1Q9BZE9 553 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 REXO4Q9GZR2 422 aaKnown RBP5.25□□□□□ -1.57
VPS41-213ENST00000485955 C11orf54Q9H0W9 315 aaPredicted RBP5.25□□□□□ -1.57
VPS41-213ENST00000485955 RNPEPQ9H4A4 650 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 VSX1Q9NZR4 365 aaPredicted RBP5.25□□□□□ -1.57
VPS41-213ENST00000485955 RNF181Q9P0P0 153 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 HSFX1Q9UBD0 423 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 MRFAP1Q9Y605 127 aa5.25□□□□□ -1.57
VPS41-213ENST00000485955 RHOBTB3O94955 611 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 GPANK1O95872 356 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 FOSP01100 380 aaPredicted RBP5.24□□□□□ -1.57
VPS41-213ENST00000485955 ITGAMP11215 1152 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 BMP5P22003 454 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 ADRA1BP35368 520 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 SLC16A1P53985 500 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 USP14P54578 494 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 CXADRP78310 365 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 KRT85P78386 507 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 CREMQ03060 361 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 FLYWCH1Q4VC44 716 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 ABHD17BQ5VST6 288 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 OLFML1Q6UWY5 402 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 RSPH3Q86UC2 560 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 TBC1D15Q8TC07 691 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 RNF31Q96EP0 1072 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 MRGPRX4Q96LA9 322 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 SYNPO2LQ9H987 977 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 TMEM74BQ9NUR3 256 aa5.24□□□□□ -1.57
VPS41-213ENST00000485955 SALL3Q9BXA9 1300 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 COL11A2P13942 1736 aaPredicted RBP5.23□□□□□ -1.57
VPS41-213ENST00000485955 GRM6O15303 877 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 ZRANB2O95218 330 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS41-213ENST00000485955 FCER1AP12319 257 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 ALAS1P13196 640 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 TGM1P22735 817 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 PLA2G5P39877 138 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 SEC24CP53992 1094 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 NANOS3P60323 173 aaKnown RBP5.23□□□□□ -1.57
VPS41-213ENST00000485955 CYP2A13Q16696 494 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 SPDYE7PQ495Y7 208 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 EFCAB2Q5VUJ9 269 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 PNMA8AQ86V59 439 aaPredicted RBP5.23□□□□□ -1.57
VPS41-213ENST00000485955 Q8NA96 180 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 NUP133Q8WUM0 1156 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 FUBP1Q96AE4 644 aaKnown RBP5.23□□□□□ -1.57
VPS41-213ENST00000485955 ZG16BQ96DA0 208 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 GPATCH3Q96I76 525 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 BOD1Q96IK1 185 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 CLPTM1LQ96KA5 538 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 COQ10AQ96MF6 247 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 SMAD5Q99717 465 aaKnown RBP5.23□□□□□ -1.57
VPS41-213ENST00000485955 SLC13A1Q9BZW2 595 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 NOX1Q9Y5S8 564 aa5.23□□□□□ -1.57
VPS41-213ENST00000485955 SGTAO43765 313 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 LMNAP02545 664 aaKnown RBP5.22□□□□□ -1.57
VPS41-213ENST00000485955 HKR1P10072 659 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 MPLP40238 635 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms