RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TOB1P50616 345 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 OSTNP61366 133 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 SAFBQ15424 915 aaKnown RBP eCLIP15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 IL17AQ16552 155 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 UPP1Q16831 310 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 DCAF4L1Q3SXM0 396 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 KCNK18Q7Z418 384 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 CLDN23Q96B33 292 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 MCRS1Q96EZ8 462 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 PLA2G2FQ9BZM2 168 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 DDX19AQ9NUU7 478 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 KIAA1024Q9UPX6 916 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 SMIM28A0A1B0GU29 152 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 E9PMD0 336 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 LILRB5O75023 590 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 ECI2O75521 394 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 RPS9P46781 194 aaKnown RBP15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 FXR2P51116 673 aaKnown RBP eCLIP15.2■□□□□ 0.024e-7■□□□□ 8.1
SQSTM1-208ENST00000485412 PEX3P56589 373 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 MAPK7Q13164 816 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 FBXO18Q8NFZ0 1043 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 ERMNQ8TAM6 284 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 RTKNQ9BST9 563 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 RUSC1Q9BVN2 902 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 FOXP1Q9H334 677 aaPredicted RBP15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 PTPRHQ9HD43 1115 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 PRMT8Q9NR22 394 aaPredicted RBP15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 HEBP1Q9NRV9 189 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 GDE1Q9NZC3 331 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 RAB23Q9ULC3 237 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 ACACBO00763 2458 aa15.2■□□□□ 0.02
SQSTM1-208ENST00000485412 DCDC2BA2VCK2 349 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ABLIM1O14639 778 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 CEBPBP17676 345 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 NPTX2P47972 431 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 RBM25P49756 843 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ROR1Q01973 937 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ADCY1Q08828 1119 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 PPP2R5AQ15172 486 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ZNF568Q3ZCX4 644 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ALKAL1Q6UXT8 129 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 RTL10Q7L3V2 364 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 SNX29Q8TEQ0 813 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 NELL1Q92832 810 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 C18orf25Q96B23 403 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 IFT74Q96LB3 600 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 ACO2Q99798 780 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 TARS2Q9BW92 718 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 FAM126AQ9BYI3 521 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 LRWD1Q9UFC0 647 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 NDRG2Q9UN36 371 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 LIMCH1Q9UPQ0 1083 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 TNFSF13BQ9Y275 285 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 PCDHB6Q9Y5E3 794 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 RALGAPA1Q6GYQ0 2036 aa15.19■□□□□ 0.02
SQSTM1-208ENST00000485412 KMT2BQ9UMN6 2715 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 WDR27A2RRH5 827 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 SHISA7A6NL88 538 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 CCDC169A6NNP5 214 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 K7ERI5 159 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 HIP1RO75146 1068 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 RHOP08100 348 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 GRM5P41594 1212 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 EFNA5P52803 228 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 MTAPQ13126 283 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 PPP2R5DQ14738 602 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 SEZ6Q53EL9 994 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 XKR4Q5GH76 650 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 HAUS3Q68CZ6 603 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 IGSF22Q8N9C0 903 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 KIFAP3Q92845 792 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 DNASE1L2Q92874 299 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 TCEAL4Q96EI5 215 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 ZBTB45Q96K62 511 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 KIF2CQ99661 725 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 MMTAG2Q9BU76 263 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 ARHGAP28Q9P2N2 729 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 BACE2Q9Y5Z0 518 aa15.18■□□□□ 0.02
SQSTM1-208ENST00000485412 PHLPP2Q6ZVD8 1323 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 F5P12259 2224 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 SFI1A8K8P3 1242 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 MAN2B1O00754 1011 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 SEC24AO95486 1093 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 LRG1P02750 347 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 HARSP12081 509 aaKnown RBP15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 PTPN2P17706 415 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 ELF1P32519 619 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 CCR2P41597 374 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 NRLP54845 237 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 ARPP19P56211 112 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 PTGDRQ13258 359 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 ORC2Q13416 577 aaPredicted RBP15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 LPAL2Q16609 132 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 TANGO2Q6ICL3 276 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 ANKS3Q6ZW76 656 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 ELSPBP1Q96BH3 223 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 BRD9Q9H8M2 597 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 PPP4R2Q9NY27 417 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 NCANO14594 1321 aa15.17■□□□□ 0.02
SQSTM1-208ENST00000485412 TSC2P49815 1807 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms