RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 USP49Q70CQ1 688 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 FRMD5Q7Z6J6 570 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 LARP4BQ92615 738 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 STAMQ92783 540 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 C18orf25Q96B23 403 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 INTS4Q96HW7 963 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 EPSTI1Q96J88 318 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 MYADMQ96S97 322 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 NOTCH4Q99466 2003 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 PARVGQ9HBI0 331 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 TCHHQ07283 1943 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 PRR23AA6NEV1 266 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 TRAPPC3O43617 180 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 TBCAO75347 108 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 ZMYND10O75800 440 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 CFHP08603 1231 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 CXCL8P10145 99 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 AOC1P19801 751 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 OR1D2P34982 312 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 LIG4P49917 911 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 GET4Q7L5D6 327 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 DDX27Q96GQ7 796 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 RHOBTB2Q9BYZ6 727 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 PRKD2Q9BZL6 878 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 CCSER1Q9C0I3 900 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 HAPLN2Q9GZV7 340 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 IGSF9Q9P2J2 1179 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 MTRRQ9UBK8 725 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 FBXO2Q9UK22 296 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 VPS13AQ96RL7 3174 aa17.16■□□□□ 0.34
CCDC88B-205ENST00000472524 HNRNPDLO14979 420 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 TRAK2O60296 914 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 C8AP07357 584 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 SPAG1Q07617 926 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 SLC10A6Q3KNW5 377 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 PPM1LQ5SGD2 360 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 CLIC6Q96NY7 704 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 EPS15L1Q9UBC2 864 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 TUBGCP4Q9UGJ1 667 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 TBX20Q9UMR3 447 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 MTMR6Q9Y217 621 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 NUB1Q9Y5A7 615 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 CDY1Q9Y6F8 540 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 DMDP11532 3685 aa17.15■□□□□ 0.34
CCDC88B-205ENST00000472524 KRBA1A5PL33 1030 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 CCL16O15467 120 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 TNFSF9P41273 254 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 ZNF131P52739 623 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 RSPO2Q6UXX9 243 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 ANKS3Q6ZW76 656 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 CCDC105Q8IYK2 499 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 TMEM130Q8N3G9 435 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 SLC44A3Q8N4M1 653 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 ST13P5Q8NFI4 369 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 SLC7A14Q8TBB6 771 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 USP28Q96RU2 1077 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 CCDC39Q9UFE4 941 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 POLIQ9UNA4 740 aa17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 SRPRBQ9Y5M8 271 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-205ENST00000472524 SCN1AP35498 2009 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 STX6O43752 255 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 PAPLNO95428 1278 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 CLTAP09496 248 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 NMT1P30419 496 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 RPL9P32969 192 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 MCM4P33991 863 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 DDIT3P35638 169 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 TXLNAP40222 546 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 RAB33AQ14088 237 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 VARS2Q5ST30 1063 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 ZBTB41Q5SVQ8 909 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 AXDND1Q5T1B0 1012 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 DYMQ7RTS9 669 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 GRASPQ7Z6J2 395 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 KRI1Q8N9T8 703 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 DTWD2Q8NBA8 298 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 KIF12Q96FN5 646 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 BACE2Q9Y5Z0 518 aa17.13■□□□□ 0.33
CCDC88B-205ENST00000472524 PIGRP01833 764 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 HNRNPA1P09651 372 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 ARPP19P56211 112 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 NTHL1P78549 312 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 PPP2R3AQ06190 1150 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 ANGPT1Q15389 498 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 RRAGBQ5VZM2 374 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 KCNN1Q92952 543 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 NKD2Q969F2 451 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 FIZ1Q96SL8 496 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 ZSCAN16Q9H4T2 348 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 WNT16Q9UBV4 365 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 STK17AQ9UEE5 414 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 CA14Q9ULX7 337 aa17.12■□□□□ 0.33
CCDC88B-205ENST00000472524 TTC26A0AVF1 554 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 LACTBL1A8MY62 500 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 STK25O00506 426 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 SYN3O14994 580 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 OGTO15294 1046 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 XYLBO75191 536 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 SCP2P22307 547 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 FSHRP23945 695 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms