RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 PDIA5Q14554 519 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 ZRSR1Q15695 479 aaKnown RBP22.58■■□□□ 1.21
COL6A1-203ENST00000466285 PABPC1LQ4VXU2 614 aaKnown RBP22.58■■□□□ 1.21
COL6A1-203ENST00000466285 PHLDB3Q6NSJ2 640 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 TCEAL4Q96EI5 215 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 ZSCAN31Q96LW9 406 aaPredicted RBP22.58■■□□□ 1.21
COL6A1-203ENST00000466285 KMT5AQ9NQR1 393 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 ANKFY1Q9P2R3 1169 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 NCANO14594 1321 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 SHISA7A6NL88 538 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 TBC1D4O60343 1298 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 POU2F2P09086 479 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 CCR2P41597 374 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 ARPP19P56211 112 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 SPAG1Q07617 926 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 MPZL3Q6UWV2 235 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 UROC1Q96N76 676 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 CCDC94Q9BW85 323 aaPredicted RBP22.57■■□□□ 1.2
COL6A1-203ENST00000466285 TMEM134Q9H6X4 195 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 CNTN3Q9P232 1028 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 DNM3Q9UQ16 869 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 GPR179Q6PRD1 2367 aa22.57■■□□□ 1.2
COL6A1-203ENST00000466285 XYLBO75191 536 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 RHOP08100 348 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 MCF2P10911 925 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 KCNE1P15382 129 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 FCARP24071 287 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 STARD6P59095 220 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 KRT79Q5XKE5 535 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 SLC8B1Q6J4K2 584 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 PDXDC1Q6P996 788 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 MCRS1Q96EZ8 462 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 SIT1Q9Y3P8 196 aa22.56■■□□□ 1.2
COL6A1-203ENST00000466285 PRPHP41219 470 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 YARSP54577 528 aaKnown RBP22.55■■□□□ 1.2
COL6A1-203ENST00000466285 ATP2C1P98194 919 aaPredicted RBP22.55■■□□□ 1.2
COL6A1-203ENST00000466285 MLF2Q15773 248 aaPredicted RBP22.55■■□□□ 1.2
COL6A1-203ENST00000466285 SLC10A6Q3KNW5 377 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 PRSS36Q5K4E3 855 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 ZBTB41Q5SVQ8 909 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 ANKS3Q6ZW76 656 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 TMEM161BQ8NDZ6 487 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 DRC1Q96MC2 740 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 DDX23Q9BUQ8 820 aaKnown RBP22.55■■□□□ 1.2
COL6A1-203ENST00000466285 FBXL5Q9UKA1 691 aa22.55■■□□□ 1.2
COL6A1-203ENST00000466285 ZFP37Q9Y6Q3 630 aaPredicted RBP22.55■■□□□ 1.2
COL6A1-203ENST00000466285 ABLIM3O94929 683 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 SP9P0CG40 484 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 CXCL8P10145 99 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 MAPTP10636 758 aaKnown RBP22.54■■□□□ 1.2
COL6A1-203ENST00000466285 GUCY2CP25092 1073 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 GUCY2FP51841 1108 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 SLC12A3P55017 1021 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 HYIQ5T013 277 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 ERICH6BQ5W0A0 696 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 DTHD1Q6ZMT9 781 aa22.54■■□□□ 1.2
COL6A1-203ENST00000466285 TOPORSQ9NS56 1045 aaPredicted RBP22.54■■□□□ 1.2
COL6A1-203ENST00000466285 MRPS23Q9Y3D9 190 aaKnown RBP22.54■■□□□ 1.2
COL6A1-203ENST00000466285 ARHGEF37A1IGU5 675 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 VNN2O95498 520 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 TNFSF9P41273 254 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 MRPL58Q14197 206 aaKnown RBP22.53■■□□□ 1.2
COL6A1-203ENST00000466285 UVSSAQ2YD98 709 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 TMEM119Q4V9L6 283 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 MCTP1Q6DN14 999 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 TANGO2Q6ICL3 276 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 MTSS1LQ765P7 747 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 HS6ST3Q8IZP7 471 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 ACAP3Q96P50 834 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 TCHPQ9BT92 498 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 INSL5Q9Y5Q6 135 aa22.53■■□□□ 1.2
COL6A1-203ENST00000466285 CACNA1AO00555 2505 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 VWA3AA6NCI4 1184 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 PPEF2O14830 753 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 MOSPD3O75425 235 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 PLS3P13797 630 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 GRIN1Q05586 938 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 NOLC1Q14978 699 aaKnown RBP eCLIP22.52■■□□□ 1.2
COL6A1-203ENST00000466285 SLC44A4Q53GD3 710 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 ARSHQ5FYA8 562 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 C1orf210Q8IVY1 113 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 ZNF461Q8TAF7 563 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 TBC1D32Q96NH3 1257 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 CORO1BQ9BR76 489 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 RAB34Q9BZG1 259 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 CYP4F11Q9HBI6 524 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 KCNH3Q9ULD8 1083 aa22.52■■□□□ 1.2
COL6A1-203ENST00000466285 KANSL1LA0AUZ9 987 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 LAD1O00515 517 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 TRAPPC3O43617 180 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 OR4Q2P0C623 313 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 GJA1P17302 382 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 TARSP26639 723 aaKnown RBP22.51■■□□□ 1.19
COL6A1-203ENST00000466285 GRM2Q14416 872 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 UBXN2BQ14CS0 331 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 SYT2Q8N9I0 419 aaPredicted RBP22.51■■□□□ 1.19
COL6A1-203ENST00000466285 SPIRE2Q8WWL2 714 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 SUSD3Q96L08 255 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 ZSWIM3Q96MP5 696 aa22.51■■□□□ 1.19
COL6A1-203ENST00000466285 CRISPLD1Q9H336 500 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms