RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 PTPRJQ12913 1337 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 LRRC10BA6NIK2 292 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 KCNJ18B7U540 433 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 PMM2O15305 246 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 DDHD2O94830 711 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 LRPAP1P30533 357 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 RPL9P32969 192 aaKnown RBP12.52□□□□□ -0.4
SCN9A-204ENST00000452182 TPM4P67936 248 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 RNASELQ05823 741 aaKnown RBP12.52□□□□□ -0.4
SCN9A-204ENST00000452182 KCNJ12Q14500 433 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 FAM109BQ6ICB4 259 aaPredicted RBP12.52□□□□□ -0.4
SCN9A-204ENST00000452182 C15orf39Q6ZRI6 1047 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 ZNF280BQ86YH2 543 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 COLGALT2Q8IYK4 626 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 BEST2Q8NFU1 509 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 ZNF516Q92618 1163 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 CLP1Q92989 425 aaKnown RBP12.52□□□□□ -0.4
SCN9A-204ENST00000452182 ANKRD36BP1Q96IX9 119 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 UROC1Q96N76 676 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 POP1Q99575 1024 aaKnown RBP12.52□□□□□ -0.4
SCN9A-204ENST00000452182 TMEM175Q9BSA9 504 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 CWH43Q9H720 699 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 NRDE2Q9H7Z3 1164 aa12.52□□□□□ -0.4
SCN9A-204ENST00000452182 GOLGA6L19H0YKK7 550 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TNNC2P02585 160 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TMEM191BP0C7N4 346 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TFAMQ00059 246 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 SOX4Q06945 474 aaPredicted RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 PPP3CAQ08209 521 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 ZACNQ401N2 412 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 PAN2Q504Q3 1202 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 FIBCD1Q8N539 461 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 ANKRD20A12PQ8NF67 263 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 OR5B17Q8NGF7 314 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 CXorf38Q8TB03 319 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 C18orf25Q96B23 403 aaPredicted RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 DDX27Q96GQ7 796 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 FAM193BQ96PV7 902 aaPredicted RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TUBGCP2Q9BSJ2 902 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 MTMR12Q9C0I1 747 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TMEM8AQ9HCN3 771 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 DPP3Q9NY33 737 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 LIMA1Q9UHB6 759 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 ITGA11Q9UKX5 1188 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 KIAA1671Q9BY89 1806 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 ANO9A1A5B4 782 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 GRXCR1A8MXD5 290 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 P4HA2O15460 535 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 C4BPAP04003 597 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 LINC00271P0C7V0 271 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TRIM49P0CI25 452 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TRIM49CP0CI26 452 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 LAG3P18627 525 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 MTIF2P46199 727 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 CLCN6P51797 869 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 RABGGTBP53611 331 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 SMAD3P84022 425 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 RAB30Q15771 203 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 MAN2A1Q16706 1144 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 UPP1Q16831 310 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 LRIT3Q3SXY7 679 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 HSP90AA4PQ58FG1 418 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 DCAF17Q5H9S7 520 aaPredicted RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TCERG1LQ5VWI1 586 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 KRT39Q6A163 491 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 SV2AQ7L0J3 742 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TRAPPC11Q7Z392 1133 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 C1orf127Q8N9H9 656 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 PBX4Q9BYU1 374 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 TUBGCP4Q9UGJ1 667 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 RWDD3Q9Y3V2 267 aa12.51□□□□□ -0.41
SCN9A-204ENST00000452182 MRPL42Q9Y6G3 142 aaKnown RBP12.51□□□□□ -0.41
SCN9A-204ENST00000452182 NLRC5Q86WI3 1866 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 TMEM189-UBE2V1I3L0A0 370 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 PIRO00625 290 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 B4GALT3O60512 393 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 N4BP1O75113 896 aaKnown RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 AFPP02771 609 aaKnown RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 ALDH2P05091 517 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 ATP1A3P13637 1013 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 CDK11BP21127 795 aaKnown RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 PAX3P23760 479 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 GCLMP48507 274 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 FMO5P49326 533 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 MXI1P50539 228 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 CLCNKBP51801 687 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 KCNH2Q12809 1159 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 KRT31Q15323 416 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 MIIPQ5JXC2 388 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 TDRD10Q5VZ19 366 aaKnown RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 LMBRD2Q68DH5 695 aaPredicted RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 APTXQ7Z2E3 356 aaKnown RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 GAS2L3Q86XJ1 694 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 CREBRFQ8IUR6 639 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 AAASQ9NRG9 546 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 DNAJB4Q9UDY4 337 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 COLQQ9Y215 455 aaPredicted RBP12.5□□□□□ -0.41
SCN9A-204ENST00000452182 COQ4Q9Y3A0 265 aa12.5□□□□□ -0.41
SCN9A-204ENST00000452182 LAMA3Q16787 3333 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms