RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 MED14O60244 1454 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PDS5AQ29RF7 1337 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 FAM196BA6NMK8 535 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 KRT8P05787 483 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 KLRC1P26715 233 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 IREB2P48200 963 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PTK7Q13308 1070 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PTK2BQ14289 1009 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 BARGINQ6ZT62 677 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 EP400NLQ6ZTU2 488 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TAGAPQ8N103 731 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SYNE4Q8N205 404 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PCYOX1LQ8NBM8 494 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ZNF555Q8NEP9 628 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 IGDCC4Q8TDY8 1250 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 KLHL11Q9NVR0 708 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 HSPBP1Q9NZL4 362 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ZSCAN9O15535 394 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SNRPAP09012 282 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ADORA2BP29275 332 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 VHLP40337 213 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 HSD17B4P51659 736 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 EFNA5P52803 228 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 KDM7AQ6ZMT4 941 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 RRM2BQ7LG56 351 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SETD3Q86TU7 594 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ADCK1Q86TW2 530 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 NR1H4Q96RI1 486 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ERGIC2Q96RQ1 377 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 MMTAG2Q9BU76 263 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 FUT8Q9BYC5 575 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 FAM129AQ9BZQ8 928 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TMEM117Q9H0C3 514 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TDRD3Q9H7E2 651 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 RGL1Q9NZL6 768 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ALG6Q9Y672 507 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 GLI2P10070 1586 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 UGGT1Q9NYU2 1555 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 MYMKA6NI61 221 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ZNF197O14709 1029 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SLC26A4O43511 780 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 RPS6KA4O75676 772 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CCDC159P0C7I6 412 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ACADSP16219 412 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ATP6V1E1P36543 226 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PIGHQ14442 188 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SLC29A2Q14542 456 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 C12orf60Q5U649 245 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 WDR93Q6P2C0 686 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CYB5D1Q6P9G0 228 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 TTC23LQ6PF05 361 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 REXO1L1PQ8IX06 675 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SCFD1Q8WVM8 642 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CELF1Q92879 486 aaKnown RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 NSL1Q96IY1 281 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 EPAS1Q99814 870 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 TRIM62Q9BVG3 475 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SIK2Q9H0K1 926 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PCMTD2Q9NV79 361 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 XPO7Q9UIA9 1087 aaKnown RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 C3orf70A6NLC5 250 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 GNAT1P11488 350 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PDGFRAP16234 1089 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 COMTP21964 271 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PLA2G4AP47712 749 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 RABL6Q3YEC7 729 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 RNF219Q5W0B1 726 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 LVRNQ6Q4G3 990 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ELOA2Q8IYF1 753 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SYN2Q92777 582 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 HIC2Q96JB3 615 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CELF4Q9BZC1 486 aaKnown RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CARD9Q9H257 536 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 MAD2L2Q9UI95 211 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PNMA3Q9UL41 463 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SATB2Q9UPW6 733 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 NPHP3-ACAD11A0A0J9YXS1 232 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 AIM2O14862 343 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 WEE2P0C1S8 567 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 FDX1P10109 184 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SLC9A1P19634 815 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 BRD2P25440 801 aaKnown RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 TRIM28Q13263 835 aaKnown RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 WDR72Q3MJ13 1102 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 C6orf10Q5SRN2 563 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 LMBRD2Q68DH5 695 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 C3orf62Q6ZUJ4 267 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CYFIP1Q7L576 1253 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 TRAPPC11Q7Z392 1133 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 COL23A1Q86Y22 540 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CLEC4FQ8N1N0 589 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ASAP3Q8TDY4 903 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 SPON2Q9BUD6 331 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 KDM4CQ9H3R0 1056 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 GPBP1L1Q9HC44 474 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-204ENST00000448183 NDFIP2Q9NV92 336 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 PDP2Q9P2J9 529 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 CHMP2BQ9UQN3 213 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ATP11BQ9Y2G3 1177 aa8.17□□□□□ -1.1
NEDD9-204ENST00000448183 ABCC3O15438 1527 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms