RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 MAPK8IP1Q9UQF2 711 aa20.26■□□□□ 0.83
SHH-204ENST00000441114 NUB1Q9Y5A7 615 aa20.26■□□□□ 0.83
SHH-204ENST00000441114 TCF20Q9UGU0 1960 aaKnown RBP20.25■□□□□ 0.83
SHH-204ENST00000441114 KINO60870 393 aaKnown RBP20.25■□□□□ 0.83
SHH-204ENST00000441114 RHOBTB3O94955 611 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 ADRB2P07550 413 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 KLRC2P26717 231 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 RPL9P32969 192 aaKnown RBP20.25■□□□□ 0.83
SHH-204ENST00000441114 LTBRP36941 435 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 CYP2J2P51589 502 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 KCNQ1P51787 676 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 ZBTB6Q15916 424 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 BMT2Q1RMZ1 405 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 CTC1Q2NKJ3 1217 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 KIAA0319Q5VV43 1072 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 CD300LGQ6UXG3 332 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 HS2ST1Q7LGA3 356 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 GLYCTKQ8IVS8 523 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 RDH13Q8NBN7 331 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 BEST2Q8NFU1 509 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 VN1R2Q8NFZ6 395 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 TIGD1Q96MW7 591 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 KLHL5Q96PQ7 755 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 EMILIN2Q9BXX0 1053 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 ASB7Q9H672 318 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 SSX2IPQ9Y2D8 614 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 IRAK3Q9Y616 596 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 VWA8A3KMH1 1905 aa20.25■□□□□ 0.83
SHH-204ENST00000441114 TMEM189-UBE2V1I3L0A0 370 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 TBX10O75333 385 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 IL18RAPO95256 599 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 GLP2RO95838 553 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 CNPP09543 421 aaKnown RBP20.24■□□□□ 0.83
SHH-204ENST00000441114 WNT7BP56706 349 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 DSG1Q02413 1049 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 ELAVL2Q12926 359 aaKnown RBP20.24■□□□□ 0.83
SHH-204ENST00000441114 AAK1Q2M2I8 961 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 RTP2Q5QGT7 225 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 PRSS55Q6UWB4 352 aaPredicted RBP20.24■□□□□ 0.83
SHH-204ENST00000441114 BRSK2Q8IWQ3 736 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 ASB2Q96Q27 587 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 CHST7Q9NS84 486 aa20.24■□□□□ 0.83
SHH-204ENST00000441114 HOOK1Q9UJC3 728 aaKnown RBP20.24■□□□□ 0.83
SHH-204ENST00000441114 KIAA0391O15091 583 aaKnown RBP20.23■□□□□ 0.83
SHH-204ENST00000441114 TRAPPC3O43617 180 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 LILRB3O75022 631 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 RPL17P18621 184 aaKnown RBP20.23■□□□□ 0.83
SHH-204ENST00000441114 CYP3A5P20815 502 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 MCM4P33991 863 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 PLXNA3P51805 1871 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 UBE2HP62256 183 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 KCNB1Q14721 858 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 COL19A1Q14993 1142 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 SPATA1Q5VX52 437 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 CBWD2Q8IUF1 395 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 SMARCE1Q969G3 411 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 TSPAN18Q96SJ8 248 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 TTPALQ9BTX7 342 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 APOL5Q9BWW9 433 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 PDE11AQ9HCR9 933 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 DERAQ9Y315 318 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 HCFC2Q9Y5Z7 792 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 PRUNE2Q8WUY3 3088 aa20.23■□□□□ 0.83
SHH-204ENST00000441114 ZNF233A6NK53 670 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 SMC2O95347 1197 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 SRGAP2BP0DMP2 458 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 EPCAMP16422 314 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 TKTP29401 623 aaKnown RBP20.22■□□□□ 0.83
SHH-204ENST00000441114 LRPAP1P30533 357 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 TFAMQ00059 246 aaKnown RBP20.22■□□□□ 0.83
SHH-204ENST00000441114 POU5F1Q01860 360 aaKnown RBP20.22■□□□□ 0.83
SHH-204ENST00000441114 LEXMQ3ZCV2 418 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 EFCAB13Q8IY85 973 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 SMYD4Q8IYR2 804 aaPredicted RBP20.22■□□□□ 0.83
SHH-204ENST00000441114 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.22■□□□□ 0.83
SHH-204ENST00000441114 DPP3Q9NY33 737 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 CLEC1BQ9P126 229 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 PCDHA5Q9Y5H7 936 aa20.22■□□□□ 0.83
SHH-204ENST00000441114 FSD2A1L4K1 749 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 PPEF2O14830 753 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 TEX28O15482 410 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 KIF20AO95235 890 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 SNRPFP62306 86 aaKnown RBP20.21■□□□□ 0.83
SHH-204ENST00000441114 PSMD5Q16401 504 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 ISM2Q6H9L7 571 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.21■□□□□ 0.83
SHH-204ENST00000441114 PALB2Q86YC2 1186 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 XXYLT1Q8NBI6 393 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 FAM84AQ96KN4 292 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 KIAA1586Q9HCI6 787 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 RMND1Q9NWS8 449 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 CGNQ9P2M7 1197 aaKnown RBP20.21■□□□□ 0.83
SHH-204ENST00000441114 CD207Q9UJ71 328 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 C2CD2Q9Y426 696 aa20.21■□□□□ 0.83
SHH-204ENST00000441114 BRWD1Q9NSI6 2320 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 EXOC3O60645 756 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 ADH1AP07327 375 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 FGFR3P22607 806 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 KCNC3Q14003 757 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 SNRNP35Q16560 246 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms