RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ARSHQ5FYA8 562 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 POTEBQ6S5H4 581 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ZNF713Q8N859 430 aaPredicted RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 STK32AQ8WU08 396 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 SLC35C1Q96A29 364 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 THAP2Q9H0W7 228 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 CDC42EP4Q9H3Q1 356 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 METTL14Q9HCE5 456 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 CYP39A1Q9NYL5 469 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ALG6Q9Y672 507 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MCM3APO60318 1980 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 FOXO6A8MYZ6 492 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L15C9J2P7 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L13C9JLJ4 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L11C9JVI0 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L18D6R9N7 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L22D6RA61 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L17D6RBQ6 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L19D6RCP7 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L20D6RJB6 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 FKTNO75072 461 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ACSL3O95573 720 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 PDHA1P08559 390 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 TPBGLP0DKB5 382 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 STX2P32856 288 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 CASP4P49662 377 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 TUBP50607 506 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 RPS6KA3P51812 740 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 USP17L24Q0WX57 530 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MTFR1Q15390 333 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 FAM110CQ1W6H9 321 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ZNF568Q3ZCX4 644 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 APLFQ8IW19 511 aaPredicted RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 AGGF1Q8N302 714 aaeCLIP9.13□□□□□ -0.95
HPS4-206ENST00000439453 GMCL1Q96IK5 515 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MAGEB18Q96M61 343 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 UIMC1Q96RL1 719 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 LRMDAQ9H2I8 198 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 PDXKO00764 312 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 BRAFP15056 766 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MARCKSL1P49006 195 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 PEX5P50542 639 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 ROR2Q01974 943 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 SP3Q02447 781 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 LBRQ14739 615 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 INTS8Q75QN2 995 aaKnown RBP9.13□□□□□ -0.95
HPS4-206ENST00000439453 CYFIP1Q7L576 1253 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 UBL4BQ8N7F7 174 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 TEKT4Q8WW24 435 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 KRT35Q92764 455 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 SYT11Q9BT88 431 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 MYLK2Q9H1R3 596 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 RIOX1Q9H6W3 641 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 TAS2R14Q9NYV8 317 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 CTNNAL1Q9UBT7 734 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 PTPN22Q9Y2R2 807 aa9.13□□□□□ -0.95
HPS4-206ENST00000439453 GTPBP10A4D1E9 387 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 MIF4GDA9UHW6 222 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 ATP5HO75947 161 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 GGPS1O95749 300 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 NR3C1P04150 777 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 TNFAIP3P21580 790 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 DSG3P32926 999 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 COILP38432 576 aaPredicted RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 DRAP1Q14919 205 aaPredicted RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 UBE2SQ16763 222 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 OTOP1Q7RTM1 612 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 VSIG1Q86XK7 387 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 CCDC105Q8IYK2 499 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 GRAMD1AQ96CP6 724 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 NUDCD1Q96RS6 583 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SYT15Q9BQS2 421 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 STK33Q9BYT3 514 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SEPT11Q9NVA2 429 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 ANKRD62A6NC57 917 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 TMEM110-MUSTN1A8MSY1 372 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SLC16A3O15427 465 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 MAP3K13O43283 966 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SLC12A3P55017 1021 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 RNASELQ05823 741 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 SGSM1Q2NKQ1 1148 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SFR1Q86XK3 245 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 FAM13CQ8NE31 585 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 GM2AP17900 193 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 RPL13P26373 211 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 GCLCP48506 637 aaPredicted RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 CALCOCO2Q13137 446 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SETDB1Q15047 1291 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 SEL1L2Q5TEA6 688 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 EPM2AIP1Q7L775 607 aaPredicted RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 ENDOVQ8N8Q3 282 aaKnown RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 ASAP3Q8TDY4 903 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 ATG4CQ96DT6 458 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 ZSWIM1Q9BR11 485 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 PORCNQ9H237 461 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 DNAJC12Q9UKB3 198 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 ASB3Q9Y575 518 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 FRMPD2Q68DX3 1309 aaPredicted RBP9.12□□□□□ -0.95
HPS4-206ENST00000439453 MYPNQ86TC9 1320 aa9.12□□□□□ -0.95
HPS4-206ENST00000439453 RTN3O95197 1032 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms