RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 TRAPPC10P48553 1259 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 ZNF174Q15697 407 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 FAM187BQ17R55 369 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 TTC38Q5R3I4 469 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 PPM1LQ5SGD2 360 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 PRSS55Q6UWB4 352 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 FRMD5Q7Z6J6 570 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 NOSTRINQ8IVI9 506 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 RNF168Q8IYW5 571 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 KCNG4Q8TDN1 519 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 PIK3R5Q8WYR1 880 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 LLPHQ9BRT6 129 aaKnown RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 CCDC94Q9BW85 323 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 NT5C3AQ9H0P0 336 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 TMEM60Q9H2L4 133 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 FOXP1Q9H334 677 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 PDZD7Q9H5P4 517 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 TOPORSQ9NS56 1045 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 CHST7Q9NS84 486 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 MIOSQ9NXC5 875 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 LRWD1Q9UFC0 647 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 CA14Q9ULX7 337 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 GDAQ9Y2T3 454 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 ZFP37Q9Y6Q3 630 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 EP300Q09472 2414 aaPredicted RBP8.54□□□□□ -1.04
VPS50-204ENST00000438395 PHLPP2Q6ZVD8 1323 aa8.54□□□□□ -1.04
VPS50-204ENST00000438395 WDR81Q562E7 1941 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 CCDC169A6NNP5 214 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 B3GAT3O94766 335 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 KIF4AO95239 1232 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 C8AP07357 584 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 LAMP2P13473 410 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 MUTP22033 750 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 NBL1P41271 181 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 DMP1Q13316 513 aaPredicted RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 ANGPT1Q15389 498 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ZNF568Q3ZCX4 644 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 RTP2Q5QGT7 225 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ATF7IP2Q5U623 682 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 CWF19L1Q69YN2 538 aaKnown RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 MTSS1LQ765P7 747 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 CCDC105Q8IYK2 499 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ZNF511Q8NB15 262 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 DTWD2Q8NBA8 298 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 SNX29Q8TEQ0 813 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 RSAD2Q8WXG1 361 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ZNF707Q96C28 371 aaPredicted RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 SHDQ96IW2 340 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ZSCAN31Q96LW9 406 aaPredicted RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 UROC1Q96N76 676 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 MYADMQ96S97 322 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 TCHPQ9BT92 498 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 KIFC3Q9BVG8 833 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 BHMT2Q9H2M3 363 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 FZD8Q9H461 694 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 TBC1D17Q9HA65 648 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 ARHGEF3Q9NR81 526 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 SH2B1Q9NRF2 756 aaPredicted RBP8.53□□□□□ -1.04
VPS50-204ENST00000438395 SNTG2Q9NY99 539 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 WNT16Q9UBV4 365 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 FBXW11Q9UKB1 542 aa8.53□□□□□ -1.04
VPS50-204ENST00000438395 WDR87Q6ZQQ6 2873 aa8.52□□□□□ -1.04
VPS50-204ENST00000438395 PRR23AA6NEV1 266 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 PROB1E7EW31 1015 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 K7ERI5 159 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 PRRG1O14668 218 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 CCL16O15467 120 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 NARSO43776 548 aaKnown RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 N4BP1O75113 896 aaKnown RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 SMCPP49901 116 aaPredicted RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 GLRA4Q5JXX5 417 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 SPECC1Q5M775 1068 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 ERICH6BQ5W0A0 696 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 KRT79Q5XKE5 535 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 ZC3H14Q6PJT7 736 aaKnown RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 ANKS3Q6ZW76 656 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 GRASPQ7Z6J2 395 aaPredicted RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 SLC44A3Q8N4M1 653 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 GSTCDQ8NEC7 633 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 SLC7A14Q8TBB6 771 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 FEZF2Q8TBJ5 459 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 BSNDQ8WZ55 320 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 CDK5RAP3Q96JB5 506 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 DRC1Q96MC2 740 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 HINFPQ9BQA5 517 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 PAAF1Q9BRP4 392 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 MRPL4Q9BYD3 311 aaKnown RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 DDX19AQ9NUU7 478 aaKnown RBP8.52□□□□□ -1.05
VPS50-204ENST00000438395 SLC38A7Q9NVC3 462 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 CACNG4Q9UBN1 327 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 CDH7Q9ULB5 785 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 KIAA1024Q9UPX6 916 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 DNM3Q9UQ16 869 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 NUB1Q9Y5A7 615 aa8.52□□□□□ -1.05
VPS50-204ENST00000438395 KMT2EQ8IZD2 1858 aa8.51□□□□□ -1.05
VPS50-204ENST00000438395 PTGESO14684 152 aa8.51□□□□□ -1.05
VPS50-204ENST00000438395 EFEMP2O95967 443 aa8.51□□□□□ -1.05
VPS50-204ENST00000438395 F12P00748 615 aaPredicted RBP8.51□□□□□ -1.05
VPS50-204ENST00000438395 HARSP12081 509 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms