RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 GPNMBQ14956 572 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 SURF1Q15526 300 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 DCAF4L1Q3SXM0 396 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 SEZ6Q53EL9 994 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 NOTUMQ6P988 496 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 ZNF397Q8NF99 534 aaPredicted RBP12.19□□□□□ -0.46
LINC00539-203ENST00000434601 TMEM40Q8WWA1 233 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 CGRRF1Q99675 332 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 EDEM3Q9BZQ6 932 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 TMEM117Q9H0C3 514 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 INTS2Q9H0H0 1204 aaKnown RBP12.19□□□□□ -0.46
LINC00539-203ENST00000434601 TOPORSQ9NS56 1045 aaPredicted RBP12.19□□□□□ -0.46
LINC00539-203ENST00000434601 CEP72Q9P209 647 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 INSL6Q9Y581 213 aa12.19□□□□□ -0.46
LINC00539-203ENST00000434601 RNF225M0QZC1 329 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 TULP1O00294 542 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 LPXNO60711 386 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 CAND2O75155 1236 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 NOL4O94818 638 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 ARHGEF15O94989 841 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 AMHP03971 560 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 CTSHP09668 335 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 SKILP12757 684 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 SLC9A1P19634 815 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 FECHP22830 423 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 MSNP26038 577 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 THPOP40225 353 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 WNT7BP56706 349 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 DEFB103AP81534 67 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 POU5F1Q01860 360 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 KYAT1Q16773 422 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 TRIM71Q2Q1W2 868 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 EPC2Q52LR7 807 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 ZNF618Q5T7W0 954 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 KLHDC7AQ5VTJ3 777 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 KRT39Q6A163 491 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 DPY19L2P1Q6NXN4 242 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 SLC27A1Q6PCB7 646 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 TRIM65Q6PJ69 517 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 CACNA2D4Q7Z3S7 1137 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 FAM228AQ86W67 206 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 TMEM139Q8IV31 216 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 THNSL1Q8IYQ7 743 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 CEP120Q8N960 986 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 OR8K1Q8NGG5 319 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 NECAB3Q96P71 396 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 POP1Q99575 1024 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 DNAJC7Q99615 494 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 BAG1Q99933 345 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 NAA15Q9BXJ9 866 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 TMX1Q9H3N1 280 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 RPF1Q9H9Y2 349 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 PDE11AQ9HCR9 933 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 SIX2Q9NPC8 291 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 PYCARDQ9ULZ3 195 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 PIN4Q9Y237 131 aaKnown RBP12.18□□□□□ -0.46
LINC00539-203ENST00000434601 DAAM1Q9Y4D1 1078 aa12.18□□□□□ -0.46
LINC00539-203ENST00000434601 PTPRJQ12913 1337 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 NLRC5Q86WI3 1866 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 LCHNA4D1U4 455 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 IL18RAPO95256 599 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 NPTXRO95502 500 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 CLTAP09496 248 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 TNNI1P19237 187 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 RFX1P22670 979 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 HOXA11P31270 313 aaPredicted RBP12.17□□□□□ -0.46
LINC00539-203ENST00000434601 AP3M2P53677 418 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 POLR2FP61218 127 aaKnown RBP12.17□□□□□ -0.46
LINC00539-203ENST00000434601 OSTNP61366 133 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 APBA1Q02410 837 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 ENOX2Q16206 610 aaKnown RBP12.17□□□□□ -0.46
LINC00539-203ENST00000434601 TSR1Q2NL82 804 aaKnown RBP12.17□□□□□ -0.46
LINC00539-203ENST00000434601 PDXDC1Q6P996 788 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 C15orf39Q6ZRI6 1047 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 WDR49Q8IV35 697 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 BAP1Q92560 729 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 FBXL5Q9UKA1 691 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 COQ4Q9Y3A0 265 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 NOC2LQ9Y3T9 749 aaKnown RBP12.17□□□□□ -0.46
LINC00539-203ENST00000434601 FHOD1Q9Y613 1164 aa12.17□□□□□ -0.46
LINC00539-203ENST00000434601 LINC01553A4QN01 128 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 LRRC53A6NM62 1247 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 ESPNB1AK53 854 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 ARHGAP6O43182 974 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 RPS6KA5O75582 802 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 CHRNA1P02708 482 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 STAG3L1P0CL83 205 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 CXCL8P10145 99 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 UCHL3P15374 230 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 GRM5P41594 1212 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 MEA1Q16626 185 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 ZACNQ401N2 412 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 FAM26DQ5JW98 314 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 LMBRD2Q68DH5 695 aaPredicted RBP12.16□□□□□ -0.46
LINC00539-203ENST00000434601 IQCEQ6IPM2 695 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 TRAF7Q6Q0C0 670 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 SV2AQ7L0J3 742 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 RRAGAQ7L523 313 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 EHBP1Q8NDI1 1231 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms