RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CTNND2Q9UQB3 1225 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 LRCH1Q9Y2L9 728 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 PAXBP1Q9Y5B6 917 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 NR2E3Q9Y5X4 410 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 TRPM1Q7Z4N2 1603 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 RPTORQ8N122 1335 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 ABCC6O95255 1503 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 WDR90Q96KV7 1748 aa4.92□□□□□ -1.62
HMGB3-203ENST00000430118 CCDC7Q96M83 1385 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SPATA31E1Q6ZUB1 1445 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 hCG_1642624A0A1W2PR95 340 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 CFAP69A5D8W1 941 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 OR14I1A6ND48 311 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 RHPN2P1A8MT19 583 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 TOMM70O94826 608 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 FSBPO95073 299 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 THBS2P35442 1172 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 AFMP43652 599 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 CD97P48960 835 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 NKX6-1P78426 367 aaPredicted RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 NOGQ13253 232 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 IZUMO3Q5VZ72 239 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 TMEM200BQ69YZ2 307 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 GRAMD4Q6IC98 578 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SWSAP1Q6NVH7 229 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 APOA5Q6Q788 366 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 IRF2BP1Q8IU81 584 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SPATA5Q8NB90 893 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 VPS37AQ8NEZ2 397 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 ABHD4Q8TB40 342 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 ANKS1AQ92625 1134 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 ALG3Q92685 438 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 HOXB13Q92826 284 aaPredicted RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 INTS4Q96HW7 963 aaKnown RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SUCLG2Q96I99 432 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 MSLNLQ96KJ4 702 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 RIPOR3Q96MK2 946 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SCLT1Q96NL6 688 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 SAMD11Q96NU1 681 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 TBCBQ99426 244 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 FDXACB1Q9BRP7 624 aaPredicted RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 ISCA1Q9BUE6 129 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 WDR12Q9GZL7 423 aaKnown RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 C14orf93Q9H972 538 aaKnown RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 AGO4Q9HCK5 861 aaKnown RBP4.91□□□□□ -1.62
HMGB3-203ENST00000430118 TFCP2L1Q9NZI6 479 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 LUZP4Q9P127 313 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 ARHGAP20Q9P2F6 1191 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 PIK3C2AO00443 1686 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 USP19O94966 1318 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 WDR17Q8IZU2 1322 aa4.91□□□□□ -1.62
HMGB3-203ENST00000430118 A0A1W2PR48 441 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 NUDT19A8MXV4 375 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 EXOC5O00471 708 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 WDHD1O75717 1129 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 CYP7B1O75881 506 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 LTA4HP09960 611 aaKnown RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 NCAM1P13591 858 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 CD53P19397 219 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PIK3CBP42338 1070 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 GRK6P43250 576 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PPM1FP49593 454 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PRIM2P49643 509 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 WNT3AP56704 352 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 SESN2P58004 480 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 ERVFC1P60507 584 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 CCT2P78371 535 aaKnown RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 IL13RA1P78552 427 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 TNFAIP2Q03169 654 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 CACNB2Q08289 660 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PLCL1Q15111 1095 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 MST1LQ2TV78 715 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 ALFQ53S48 1182 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 CCDC157Q569K6 752 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 LRSAM1Q6UWE0 723 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 LIPIQ6XZB0 460 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 POF1BQ8WVV4 589 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 RIN2Q8WYP3 895 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 DYDC2Q96IM9 177 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 RNF32Q9H0A6 362 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 WDCPQ9H6R7 721 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 RXFP1Q9HBX9 757 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PRDM7Q9NQW5 492 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 TDP1Q9NUW8 608 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 KLHL14Q9P2G3 628 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 GTF2A1LQ9UNN4 478 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 VWA7Q9Y334 891 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 PCDHB1Q9Y5F3 818 aa4.9□□□□□ -1.63
HMGB3-203ENST00000430118 POLR3AO14802 1390 aaPredicted RBP4.9□□□□□ -1.63
HMGB3-203ENST00000430118 ARHGEF28Q8N1W1 1705 aaKnown RBP4.89□□□□□ -1.63
HMGB3-203ENST00000430118 A0A0A6YYK5 440 aaPredicted RBP4.89□□□□□ -1.63
HMGB3-203ENST00000430118 SCO2A0A1W2PP80 73 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 TMEM127O75204 238 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 GCP02774 474 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 FBLN1P23142 703 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 TNFSF4P23510 183 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 CTSSP25774 331 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 ECHS1P30084 290 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 PDE6BP35913 854 aa4.89□□□□□ -1.63
HMGB3-203ENST00000430118 MGAT5Q09328 741 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms