RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KIF2CQ99661 725 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 HINFPQ9BQA5 517 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.88■□□□□ 0.13
SDC1-204ENST00000429035 BACE2Q9Y5Z0 518 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 WDR27A2RRH5 827 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 VWA3AA6NCI4 1184 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 H3BQV1 296 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 CEBPBP17676 345 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 PRPHP41219 470 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 MLF2Q15773 248 aaPredicted RBP15.87■□□□□ 0.13
SDC1-204ENST00000429035 UVSSAQ2YD98 709 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 PHLDB3Q6NSJ2 640 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 C1orf186Q6ZWK4 172 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 MCRS1Q96EZ8 462 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 SHDQ96IW2 340 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 MMTAG2Q9BU76 263 aaKnown RBP15.87■□□□□ 0.13
SDC1-204ENST00000429035 CYP4F11Q9HBI6 524 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 CNTN3Q9P232 1028 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 RBM19Q9Y4C8 960 aaKnown RBP15.87■□□□□ 0.13
SDC1-204ENST00000429035 FANCMQ8IYD8 2048 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 VPS13AQ96RL7 3174 aa15.87■□□□□ 0.13
SDC1-204ENST00000429035 CACNA1IQ9P0X4 2223 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 H7C4K7 107 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 SLC5A9Q2M3M2 681 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 C8orf34Q49A92 452 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 CTXN3Q4LDR2 81 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 CORO1BQ9BR76 489 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 TIPINQ9BVW5 301 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 PTPRHQ9HD43 1115 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 TUBGCP4Q9UGJ1 667 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 KCNH3Q9ULD8 1083 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 ANK1P16157 1881 aa15.86■□□□□ 0.13
SDC1-204ENST00000429035 DMDP11532 3685 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 NPHP3-ACAD11A0A0J9YXS1 232 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 SYN3O14994 580 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 POU2F2P09086 479 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 CXCL8P10145 99 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 PLS3P13797 630 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 CPB1P15086 417 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 KCNE1P15382 129 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 PROZP22891 400 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 GUCY2CP25092 1073 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 SMTNP53814 917 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 ATP2C1P98194 919 aaPredicted RBP15.85■□□□□ 0.13
SDC1-204ENST00000429035 PFKPQ01813 784 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 SPAG1Q07617 926 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 DHX8Q14562 1220 aaKnown RBP15.85■□□□□ 0.13
SDC1-204ENST00000429035 RABEP1Q15276 862 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 RILPL1Q5EBL4 403 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 XKR4Q5GH76 650 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 SLC8B1Q6J4K2 584 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 ZNF280DQ6N043 979 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 ZC3H14Q6PJT7 736 aaKnown RBP15.85■□□□□ 0.13
SDC1-204ENST00000429035 TPRG1Q6ZUI0 275 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 TMEM130Q8N3G9 435 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 RASSF8Q8NHQ8 419 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 PNMA5Q96PV4 448 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 C17orf75Q9HAS0 396 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 SPATA6Q9NWH7 488 aaPredicted RBP15.85■□□□□ 0.13
SDC1-204ENST00000429035 DAXXQ9UER7 740 aaPredicted RBP15.85■□□□□ 0.13
SDC1-204ENST00000429035 FBXL5Q9UKA1 691 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 TICRRQ7Z2Z1 1910 aa15.85■□□□□ 0.13
SDC1-204ENST00000429035 KANSL1LA0AUZ9 987 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 ABLIM1O14639 778 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 TOM1L1O75674 476 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 PLA2G4BP0C869 781 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 GLULP15104 373 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 CD72P21854 359 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 GJB2P29033 226 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 STARD6P59095 220 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 GRM2Q14416 872 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 ALKAL1Q6UXT8 129 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 PDZD4Q76G19 769 aaPredicted RBP15.84■□□□□ 0.13
SDC1-204ENST00000429035 C1orf210Q8IVY1 113 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 ELMOD1Q8N336 334 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 ZNF461Q8TAF7 563 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 KIF12Q96FN5 646 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 TBC1D32Q96NH3 1257 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 BCO2Q9BYV7 579 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 INSL5Q9Y5Q6 135 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 TCHHQ07283 1943 aa15.84■□□□□ 0.13
SDC1-204ENST00000429035 ARHGEF37A1IGU5 675 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 K7ENM7 598 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 CLDN3O15551 220 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 LMNAP02545 664 aaKnown RBP15.83■□□□□ 0.12
SDC1-204ENST00000429035 SP9P0CG40 484 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 MAPTP10636 758 aaKnown RBP15.83■□□□□ 0.12
SDC1-204ENST00000429035 PTPN2P17706 415 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 MARCKSP29966 332 aaPredicted RBP15.83■□□□□ 0.12
SDC1-204ENST00000429035 RPL9P32969 192 aaKnown RBP15.83■□□□□ 0.12
SDC1-204ENST00000429035 LIG4P49917 911 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 SLC12A3P55017 1021 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 PRKCQQ04759 706 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 PPP2R3AQ06190 1150 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 ADCY1Q08828 1119 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 SLC44A4Q53GD3 710 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 SYT2Q8N9I0 419 aaPredicted RBP15.83■□□□□ 0.12
SDC1-204ENST00000429035 TMEM161BQ8NDZ6 487 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 APPL2Q8NEU8 664 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 SPIRE2Q8WWL2 714 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms