RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 TMEM247A6NEH6 219 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 H0Y626 953 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 TRIM16O95361 564 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 AVPR1AP37288 418 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 CRKP46108 304 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 KIAA1841Q6NSI8 718 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 RCOR2Q8IZ40 523 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 CDHR1Q96JP9 859 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 MMTAG2Q9BU76 263 aaKnown RBP12.67□□□□□ -0.38
UBR4-205ENST00000417040 VCPKMTQ9H867 229 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 SP110Q9HB58 689 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 PHTF1Q9UMS5 762 aa12.67□□□□□ -0.38
UBR4-205ENST00000417040 PRPF4O43172 522 aaKnown RBP eCLIP12.66□□□□□ -0.387e-7■□□□□ 11.3
UBR4-205ENST00000417040 SRP72O76094 671 aaKnown RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 TBXAS1P24557 533 aaPredicted RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 ABCD1P33897 745 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 PRDM5Q9NQX1 630 aaPredicted RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 MINPP1Q9UNW1 487 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 PBRM1Q86U86 1689 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 UBE2Q2LH0YL09 131 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 TBC1D4O60343 1298 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 CYLC2Q14093 348 aaPredicted RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 MROH9Q5TGP6 573 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 TRAF7Q6Q0C0 670 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 C16orf89Q6UX73 402 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 PI4K2AQ9BTU6 479 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 TDRD3Q9H7E2 651 aaKnown RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 WDR19Q8NEZ3 1342 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 PPP1R3GB7ZBB8 358 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 HOXA7P31268 230 aaPredicted RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 SPDYAQ5MJ70 313 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 KDM7AQ6ZMT4 941 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 FAM160B2Q86V87 743 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 SETD1BQ9UPS6 1966 aaKnown RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 LINC00854A0A1B0GVQ3 168 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 DEAF1O75398 565 aaPredicted RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 HEATR4Q86WZ0 1026 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 SPIRE2Q8WWL2 714 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 SENP7Q9BQF6 1050 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 CDYLQ9Y232 598 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 SERPINB5P36952 375 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 ISLR2Q6UXK2 745 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 TMEM179Q6ZVK1 233 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 MYCBPAPQ8TBZ2 947 aa12.66□□□□□ -0.38
UBR4-205ENST00000417040 AGO2Q9UKV8 859 aaKnown RBP12.66□□□□□ -0.38
UBR4-205ENST00000417040 ZNF335Q9H4Z2 1342 aaPredicted RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 GFAPP14136 432 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 CD44P16070 742 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 SERPINB10P48595 397 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 PPHLN1Q8NEY8 458 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 POLIQ9UNA4 740 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 ZBTB24O43167 697 aaPredicted RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 GNAT1P11488 350 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 QARSP47897 775 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 PLIN5Q00G26 463 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 GRAPQ13588 217 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 EFHC2Q5JST6 749 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 CYP4A22Q5TCH4 519 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 CNPY4Q8N129 248 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 ZNF280CQ8ND82 737 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 GRAPLQ8TC17 118 aaPredicted RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 C17orf80Q9BSJ5 609 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 BEGAINQ9BUH8 593 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 STK33Q9BYT3 514 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 AIPL1Q9NZN9 384 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 HERC5Q9UII4 1024 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 MTO1Q9Y2Z2 717 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 PFASO15067 1338 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 ATP6V1G2O95670 118 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 P4HBP07237 508 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 MAPRE2Q15555 327 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 TBCCQ15814 346 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 TJAP1Q5JTD0 557 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 DEPDC1Q5TB30 811 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 TTC39BQ5VTQ0 682 aaPredicted RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 CLEC10AQ8IUN9 316 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 MMGT1Q8N4V1 131 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 OR9Q1Q8NGQ5 310 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 PACSIN1Q9BY11 444 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 ROBO2Q9HCK4 1378 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 A8MXQ7 604 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 HUS1O60921 280 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 PAX7P23759 505 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 FMO5P49326 533 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 USP10Q14694 798 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 PCSK7Q16549 785 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 HAUS6Q7Z4H7 955 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 RIN3Q8TB24 985 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 DIS3LQ8TF46 1054 aaKnown RBP12.65□□□□□ -0.38
UBR4-205ENST00000417040 LZICQ8WZA0 190 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 FAM162AQ96A26 154 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 HEY2Q9UBP5 337 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 SAMD9Q5K651 1589 aa12.65□□□□□ -0.38
UBR4-205ENST00000417040 CDH16O75309 829 aa12.64□□□□□ -0.39
UBR4-205ENST00000417040 SERPINI2O75830 405 aa12.64□□□□□ -0.39
UBR4-205ENST00000417040 MYL2P10916 166 aa12.64□□□□□ -0.39
UBR4-205ENST00000417040 FDPSP14324 419 aaKnown RBP12.64□□□□□ -0.39
UBR4-205ENST00000417040 ZNF786Q8N393 782 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms