RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NRBP2Q9NSY0 501 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 PARVAQ9NVD7 372 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 MCM8Q9UJA3 840 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 POTECB2RU33 542 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 XRCC4Q13426 336 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF554Q86TJ5 538 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 RBM15Q96T37 977 aaKnown RBP eCLIP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 WHRNQ9P202 907 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 GSTT1P30711 240 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 CCT3P49368 545 aaKnown RBP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 NCAPHQ15003 741 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC31Q6UY01 552 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 GUF1Q8N442 669 aaKnown RBP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 OSBPP22059 807 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CDH3P22223 829 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PAX7P23759 505 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF200P98182 395 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 KRT17Q04695 432 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 IYDQ6PHW0 289 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 FGD2Q7Z6J4 655 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 FUT8Q9BYC5 575 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 H2AFY2Q9P0M6 372 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 BTBD3Q9Y2F9 522 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 FHOD1Q9Y613 1164 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ABCA8O94911 1581 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PNMA6EA0A0J9YXQ4 647 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 BAIAP3O94812 1187 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PPM1NQ8N819 430 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ATXN2LQ8WWM7 1075 aaKnown RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 AMNQ9BXJ7 453 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 KLHL8Q9P2G9 620 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CDC42BPBQ9Y5S2 1711 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF18P17022 549 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 SPRTNQ9H040 489 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ABCB11O95342 1321 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 SRGAP2O75044 1071 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ATP4AP20648 1035 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PLA2G4AP47712 749 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 OASLQ15646 514 aaKnown RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 RBM17Q96I25 401 aaKnown RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 VPS11Q9H270 941 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PALD1Q9ULE6 856 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 C5orf58C9J3I9 102 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CNOT3O75175 753 aaKnown RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 FGAP02671 866 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 RBM20Q5T481 1227 aaKnown RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 EFHD2Q96C19 240 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-206ENST00000409809 TAGLN3Q9UI15 199 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 MAD2L2Q9UI95 211 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ATP7BP35670 1465 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF862O60290 1169 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC166P0CW27 439 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CCNYL1Q8N7R7 359 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 RDH13Q8NBN7 331 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 POTEMA6NI47 508 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 DYNLT1P63172 113 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 PTPROQ16827 1216 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 POTEHQ6S545 545 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 POTEGQ6S5H5 508 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 CCNJLQ8IV13 435 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 WDR37Q9Y2I8 494 aa13.51□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF608Q9ULD9 1512 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 MFN2O95140 757 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 SNRPAP09012 282 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 E4F1Q66K89 784 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC60Q8IWA6 550 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 APPL2Q8NEU8 664 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 ERP44Q9BS26 406 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 PACSIN1Q9BY11 444 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC195A0A1B0GUA6 201 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 KCNA2P16389 499 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 NAT9Q9BTE0 207 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 SAMD9LQ8IVG5 1584 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 KIAA0391O15091 583 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 MAFGO15525 162 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 DDR1Q08345 913 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 PRR23CQ6ZRP0 262 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 CNOT8Q9UFF9 292 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 ATP1A1P05023 1023 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 WARSP23381 471 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 SKIV2L2P42285 1042 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 ZBTB38Q8NAP3 1195 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 DDX47Q9H0S4 455 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 MTSS1O43312 755 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 RTN2O75298 545 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 TSNQ15631 228 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 PIK3C3Q8NEB9 887 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 STARD13Q9Y3M8 1113 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 COBLO75128 1261 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 NR1H2P55055 460 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 TCHHL1Q5QJ38 904 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 TMA16Q96EY4 203 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 ING4Q9UNL4 249 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 S100A6P06703 90 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 NPR3P17342 541 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 CDK17Q00537 523 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 RSRC2Q7L4I2 434 aaKnown RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 GIMAP8Q8ND71 665 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-206ENST00000409809 NMD3Q96D46 503 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms