RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 CHAMP1Q96JM3 812 aa13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 ASB16Q96NS5 453 aa13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 PPP1R10Q96QC0 940 aaKnown RBP13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 ZNF334Q9HCZ1 680 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 BACE2Q9Y5Z0 518 aa13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 FREM2Q5SZK8 3169 aa13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 PDCD11Q14690 1871 aaKnown RBP13.16□□□□□ -0.3
SPTLC1P3-201ENST00000403408 TMEM189-UBE2V1I3L0A0 370 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 LRP3O75074 770 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 DGAT1O75907 488 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 ABLIM3O94929 683 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 GJA1P17302 382 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 NCBP1Q09161 790 aaKnown RBP13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 SIM2Q14190 667 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 CSRP2Q16527 193 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 FAM187BQ17R55 369 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 TXNDC11Q6PKC3 985 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 PIK3AP1Q6ZUJ8 805 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 HACE1Q8IYU2 909 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 TMEM130Q8N3G9 435 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 FAM3CQ92520 227 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 CORO1BQ9BR76 489 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 CCDC113Q9H0I3 377 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 BRD9Q9H8M2 597 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 ANKEF1Q9NU02 776 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 MRPS17Q9Y2R5 130 aaKnown RBP13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 PIAS3Q9Y6X2 628 aa13.15□□□□□ -0.3
SPTLC1P3-201ENST00000403408 SETXQ7Z333 2677 aaKnown RBP13.15□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LOC400499M0QZD8 3231 aa13.15□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LRRIQ4A6NIV6 560 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MAN2B1O00754 1011 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MEFVO15553 781 aaPredicted RBP13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 USO1O60763 962 aaKnown RBP13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 B3GAT3O94766 335 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GCFC2P16383 781 aaKnown RBP13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CCNE1P24864 410 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GDI1P31150 447 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CXCL12P48061 93 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SOX9P48436 509 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 STK3Q13188 491 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SF3A2Q15428 464 aaKnown RBP13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CCDC6Q16204 474 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 UPP1Q16831 310 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GALNT17Q6IS24 598 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SLC8B1Q6J4K2 584 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TRIM22Q8IYM9 498 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TNFRSF25Q93038 417 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LRRC3BQ96PB8 259 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TRMT61BQ9BVS5 477 aaKnown RBP13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZFP14Q9HCL3 533 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 POLD4Q9HCU8 107 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CEP72Q9P209 647 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GDAQ9Y2T3 454 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CACNA1EQ15878 2313 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 EML5Q05BV3 1969 aa13.14□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CCDC194A0A1B0GVG4 234 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SPATA31C1P0DKV0 1188 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PTPN2P17706 415 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CCR3P51677 355 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 NRLP54845 237 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ELAVL2Q12926 359 aaKnown RBP13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PTGDRQ13258 359 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 NR5A1Q13285 461 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 NT5DC1Q5TFE4 455 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 HEATR6Q6AI08 1181 aaKnown RBP13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GPIHBP1Q8IV16 184 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 FAM160A2Q8N612 972 aaPredicted RBP13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CEP120Q8N960 986 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZNF461Q8TAF7 563 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TRPV5Q9NQA5 729 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PRMT7Q9NVM4 692 aaPredicted RBP13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 RAB23Q9ULC3 237 aa13.13□□□□□ -0.31
SPTLC1P3-201ENST00000403408 KIF26AQ9ULI4 1882 aaPredicted RBP13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CDC45O75419 566 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 VNN2O95498 520 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 RBM25P49756 843 aaKnown RBP13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MRPL58Q14197 206 aaKnown RBP13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PKN3Q6P5Z2 889 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PDXDC1Q6P996 788 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 RTL10Q7L3V2 364 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 TCEAL8Q8IYN2 117 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SMARCD2Q92925 531 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PRIMPOLQ96LW4 560 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZMAT2Q96NC0 199 aaKnown RBP13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 KIFC3Q9BVG8 833 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 LRRC3Q9BY71 257 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 SMOC1Q9H4F8 434 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ZSWIM6Q9HCJ5 1215 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ANGPTL2Q9UKU9 493 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 INSL5Q9Y5Q6 135 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CELSR3Q9NYQ7 3312 aa13.12□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GCN1Q92616 2671 aaKnown RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 GON4LQ3T8J9 2241 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 HEPACAM2A8MVW5 462 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 N4BP3O15049 544 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 MICAL2O94851 1124 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PAPSS2O95340 614 aaPredicted RBP13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 CTDNEP1O95476 244 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 PRKCBP05771 671 aa13.11□□□□□ -0.31
SPTLC1P3-201ENST00000403408 ATF2P15336 505 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms