RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PCMTD2Q9NV79 361 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 WARS2Q9UGM6 360 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ABCB11O95342 1321 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 PCDH11YQ9BZA8 1340 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 A6NHS1 94 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 CYP26A1O43174 497 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PIAS1O75925 651 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SAT1P21673 171 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ADRA1DP25100 572 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 GJA8P48165 433 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SPDYCQ5MJ68 293 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TRIM50Q86XT4 487 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SH3TC2Q8TF17 1288 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SPIRE2Q8WWL2 714 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 USP6NLQ92738 828 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SAR1AQ9NR31 198 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 WASF2Q9Y6W5 498 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ALKQ9UM73 1620 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 NEXMIFQ5QGS0 1516 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 CDC42BPGQ6DT37 1551 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 MEI4A8MW99 385 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 A8MXQ7 604 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 H7C0C1 242 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SMIM22K7EJ46 135 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ANPEPP15144 967 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TCN1P20061 433 aaPredicted RBP9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TAC1P20366 129 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ATP5OP48047 213 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 CASP4P49662 377 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TMPRSS6Q8IU80 811 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PASD1Q8IV76 773 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 MAML3Q96JK9 1138 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 NINJ2Q9NZG7 142 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PCDHA1Q9Y5I3 950 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TBC1D12O60347 775 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 MYBP10242 640 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 MTMR2Q13614 643 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SGSM1Q2NKQ1 1148 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ZC3H12AQ5D1E8 599 aaKnown RBP9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ARHGAP27Q6ZUM4 889 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 NKX2-3Q8TAU0 364 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PPP1R36Q96LQ0 422 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 BRIP1Q9BX63 1249 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 C1orf112Q9NSG2 853 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 UBAP1Q9NZ09 502 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ARHGAP26Q9UNA1 814 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 CHKBQ9Y259 395 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 OVOS2A0A0J9YW53 1432 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 OVOS2Q6IE36 1432 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 MYH8P13535 1937 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 C6orf229H3BNL8 230 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TBX10O75333 385 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 HLA-DOAP06340 250 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 CD19P15391 556 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 POLD1P28340 1107 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 SEC23AQ15436 765 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 GEN1Q17RS7 908 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 NAT14Q8WUY8 206 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PTPRN2Q92932 1015 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ARHGEF26Q96DR7 871 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 ABHD8Q96I13 439 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 TUBGCP5Q96RT8 1024 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 PARVGQ9HBI0 331 aa9.82□□□□□ -0.84
COL28A1-201ENST00000399429 DCP1AQ9NPI6 582 aaPredicted RBP9.82□□□□□ -0.84
COL28A1-201ENST00000399429 AIM2O14862 343 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 GSC2O15499 205 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 E2F6O75461 281 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 GJB6O95452 261 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CFBP00751 764 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 BGNP21810 368 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ANXA13P27216 316 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SSTR3P32745 418 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CIITAP33076 1130 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 MARCKSL1P49006 195 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CCR3P51677 355 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 EFHC1Q5JVL4 640 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 RINT1Q6NUQ1 792 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 LPCAT2Q7L5N7 544 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 ZBTB46Q86UZ6 589 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SLF2Q8IX21 1173 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 POU5F2Q8N7G0 328 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 PRELID2Q8N945 189 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SH3RF3Q8TEJ3 882 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SLC5A5Q92911 643 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 C11orf70Q9BRQ4 267 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 WHRNQ9P202 907 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SLAIN2Q9P270 581 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 APEX2Q9UBZ4 518 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 AXIN2Q9Y2T1 843 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 NUB1Q9Y5A7 615 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 PNPLA7Q6ZV29 1317 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 MYO3BQ8WXR4 1341 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 SMIM31A0A1B0GVY4 71 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 FOXN3O00409 490 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 FKBP6O75344 327 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 KRT75O95678 551 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 RALAP11233 206 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 NMT1P30419 496 aaKnown RBP9.81□□□□□ -0.84
COL28A1-201ENST00000399429 CHKAP35790 457 aa9.81□□□□□ -0.84
COL28A1-201ENST00000399429 FMO5P49326 533 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms