RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 POC1B-GALNT4F8VUJ3 575 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 ZSCAN5DPP0CG00 497 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 GNAZP19086 355 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 MAPK4P31152 587 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 RAD23BP54727 409 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 ZNF577Q9BSK1 485 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.65■□□□□ 0.74
CCDC3-201ENST00000378825 SIPA1L1O43166 1804 aa19.65■□□□□ 0.74
CCDC3-201ENST00000378825 GRIPAP1Q4V328 841 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 STXBP4Q6ZWJ1 553 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 TAS1R2Q8TE23 839 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 DDX1Q92499 740 aaKnown RBP19.64■□□□□ 0.73
CCDC3-201ENST00000378825 SHC3Q92529 594 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 MAML1Q92585 1016 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 SLC7A6OSQ96CW6 309 aaPredicted RBP19.64■□□□□ 0.73
CCDC3-201ENST00000378825 C12orf65Q9H3J6 166 aaKnown RBP19.64■□□□□ 0.73
CCDC3-201ENST00000378825 EURLQ9NYK6 297 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 CDH16O75309 829 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 RFX1P22670 979 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 ATP5DP30049 168 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 CETN1Q12798 172 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 STRN3Q13033 797 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 STRIP1Q5VSL9 837 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 IZUMO3Q5VZ72 239 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 FBF1Q8TES7 1133 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 SLCO2A1Q92959 643 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 PRMT6Q96LA8 375 aaPredicted RBP19.64■□□□□ 0.73
CCDC3-201ENST00000378825 TRAIPQ9BWF2 469 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 TBC1D10AQ9BXI6 508 aa19.64■□□□□ 0.73
CCDC3-201ENST00000378825 MROH7Q68CQ1 1323 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 SCN9AQ15858 1988 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 SLC16A4O15374 487 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 ETS1P14921 441 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 POLGP54098 1239 aaPredicted RBP19.63■□□□□ 0.73
CCDC3-201ENST00000378825 PKN2Q16513 984 aaKnown RBP19.63■□□□□ 0.73
CCDC3-201ENST00000378825 THEMIS2Q5TEJ8 643 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 ANO7Q6IWH7 933 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 XXYLT1Q8NBI6 393 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 HELQQ8TDG4 1101 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 PARD3BQ8TEW8 1205 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 AKT1S1Q96B36 256 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 ZBTB10Q96DT7 871 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 RNPEPL1Q9HAU8 725 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 LGALS13Q9UHV8 139 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 RBBP6Q7Z6E9 1792 aaKnown RBP19.63■□□□□ 0.73
CCDC3-201ENST00000378825 DPPA5A6NC42 116 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 FAM47DPA6NHR8 397 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 BANF1O75531 89 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 ASMTLO95671 621 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 KRT5P13647 590 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 RPA3P35244 121 aaPredicted RBP19.63■□□□□ 0.73
CCDC3-201ENST00000378825 CDR2Q01850 454 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 MTM1Q13496 603 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 TATDN1Q6P1N9 297 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 TMEM179Q6ZVK1 233 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 ARMC2Q8NEN0 867 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 RBM15Q96T37 977 aaKnown RBP eCLIP19.63■□□□□ 0.73
CCDC3-201ENST00000378825 NEU2Q9Y3R4 380 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 C10orf71Q711Q0 1435 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 UBE4BO95155 1302 aa19.63■□□□□ 0.73
CCDC3-201ENST00000378825 CFHP08603 1231 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 TPBGLP0DKB5 382 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 CD58P19256 250 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 SLC1A5Q15758 541 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 LONP2Q86WA8 852 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 DDX27Q96GQ7 796 aaKnown RBP19.62■□□□□ 0.73
CCDC3-201ENST00000378825 CSRNP1Q96S65 589 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 IDI2Q9BXS1 227 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 FHDC1Q9C0D6 1143 aaPredicted RBP19.62■□□□□ 0.73
CCDC3-201ENST00000378825 SPDYE5A6NIY4 337 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 TCP10L2B9ZVM9 353 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 TAS2R40P59535 323 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 MOGSQ13724 837 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 CEP55Q53EZ4 464 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 MORC4Q8TE76 937 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 LRRC37BQ96QE4 947 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 NUDCD1Q96RS6 583 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 LRMDAQ9H2I8 198 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 CORO1CQ9ULV4 474 aaPredicted RBP19.62■□□□□ 0.73
CCDC3-201ENST00000378825 STK24Q9Y6E0 443 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 COL11A2P13942 1736 aaPredicted RBP19.62■□□□□ 0.73
CCDC3-201ENST00000378825 NRXN2Q9P2S2 1712 aa19.62■□□□□ 0.73
CCDC3-201ENST00000378825 A0A1W2PPM1 405 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 CLRN2A0PK11 232 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 GAS8O95995 478 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 ADSSP30520 456 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 IL9RQ01113 521 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 ZYXQ15942 572 aaKnown RBP19.61■□□□□ 0.73
CCDC3-201ENST00000378825 P3H1Q32P28 736 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 ATP13A4Q4VNC1 1196 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 ACAD10Q6JQN1 1059 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 RFWD3Q6PCD5 774 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 UVRAGQ9P2Y5 699 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 QSER1Q2KHR3 1735 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 A6NHS1 94 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 IPO5O00410 1097 aaKnown RBP19.61■□□□□ 0.73
CCDC3-201ENST00000378825 FDX1P10109 184 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 CALB2P22676 271 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 MAGEA4P43358 317 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 SESN3P58005 492 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms