RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 COBLL1Q53SF7 1204 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 EFCAB13Q8IY85 973 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 RDH13Q8NBN7 331 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 GPT2Q8TD30 523 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 FBXL18Q96ME1 805 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 VN1R3Q9BXE9 311 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 NGRNQ9NPE2 291 aaKnown RBP16.08■□□□□ 0.16
COL9A1-204ENST00000370496 KIAA1468Q9P260 1216 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 TRAF3IP3Q9Y228 551 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 NUB1Q9Y5A7 615 aa16.08■□□□□ 0.16
COL9A1-204ENST00000370496 TMEM189-UBE2V1I3L0A0 370 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 SOD2P04179 222 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 TMEM191BP0C7N4 346 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 PPP1R2P41236 205 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 WNT7BP56706 349 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 ELAVL2Q12926 359 aaKnown RBP16.07■□□□□ 0.16
COL9A1-204ENST00000370496 MORC3Q14149 939 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 SURF1Q15526 300 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 TCEAL5Q5H9L2 206 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 CEP135Q66GS9 1140 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 KIAA1841Q6NSI8 718 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 DCLRE1AQ6PJP8 1040 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 NT5DC4Q86YG4 428 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 TRIML1Q8N9V2 468 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 C3orf58Q8NDZ4 430 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 FNBP1Q96RU3 617 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 PDE11AQ9HCR9 933 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 FRMD4BQ9Y2L6 1034 aa16.07■□□□□ 0.16
COL9A1-204ENST00000370496 C2CD2LO14523 706 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 FSCN2O14926 492 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 DLATP10515 647 aaKnown RBP16.06■□□□□ 0.16
COL9A1-204ENST00000370496 CTSAP10619 480 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 RPL13P26373 211 aaKnown RBP16.06■□□□□ 0.16
COL9A1-204ENST00000370496 LRPAP1P30533 357 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 MCM4P33991 863 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 GLUD2P49448 558 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 CYP24A1Q07973 514 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 ZBTB6Q15916 424 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 SPATA1Q5VX52 437 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 KLHL10Q6JEL2 608 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 SLC9A9Q8IVB4 645 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 ADSSL1Q8N142 457 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 CACTINQ8WUQ7 758 aaKnown RBP16.06■□□□□ 0.16
COL9A1-204ENST00000370496 AUTS2Q8WXX7 1259 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 CCDC127Q96BQ5 260 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 B3GALT6Q96L58 329 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 MTMR12Q9C0I1 747 aa16.06■□□□□ 0.16
COL9A1-204ENST00000370496 VWA8A3KMH1 1905 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 TSC2P49815 1807 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 TRAPPC3O43617 180 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 MYBPC2Q14324 1141 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 PSMD6Q15008 389 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 PTPN14Q15678 1187 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 NFIL3Q16649 462 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 EDRF1Q3B7T1 1238 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 USP41Q3LFD5 358 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 ZCWPW2Q504Y3 356 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 FAM171A1Q5VUB5 890 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 LMBRD2Q68DH5 695 aaPredicted RBP16.05■□□□□ 0.16
COL9A1-204ENST00000370496 ADGRD2Q7Z7M1 963 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 CEP57Q86XR8 500 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 WDR49Q8IV35 697 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 TMEM130Q8N3G9 435 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 ANKRD36BP1Q96IX9 119 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 GPR62Q9BZJ7 368 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 TLE6Q9H808 572 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 MRPL17Q9NRX2 175 aaKnown RBP16.05■□□□□ 0.16
COL9A1-204ENST00000370496 DPP3Q9NY33 737 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 CTNND2Q9UQB3 1225 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 SSX2IPQ9Y2D8 614 aa16.05■□□□□ 0.16
COL9A1-204ENST00000370496 HIDE1A8MVS5 230 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 I3L4J1 428 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 CXCL14O95715 111 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 TNNC2P02585 160 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 TNNI1P19237 187 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 BRCC3P46736 316 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 NRIP1P48552 1158 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 LRRC63Q05C16 580 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 C9orf57Q5W0N0 161 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 RBM23Q86U06 439 aaKnown RBP16.04■□□□□ 0.16
COL9A1-204ENST00000370496 RNF168Q8IYW5 571 aaPredicted RBP16.04■□□□□ 0.16
COL9A1-204ENST00000370496 TMEM174Q8WUU8 243 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 RIN2Q8WYP3 895 aaPredicted RBP16.04■□□□□ 0.16
COL9A1-204ENST00000370496 DHTKD1Q96HY7 919 aaPredicted RBP16.04■□□□□ 0.16
COL9A1-204ENST00000370496 ZNF560Q96MR9 790 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 CGRRF1Q99675 332 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 IGFLR1Q9H665 355 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 DMAC2Q9NW81 257 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 ITGA11Q9UKX5 1188 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 R3HCC1Q9Y3T6 440 aaKnown RBP16.04■□□□□ 0.16
COL9A1-204ENST00000370496 MYO7AQ13402 2215 aa16.04■□□□□ 0.16
COL9A1-204ENST00000370496 PTPRJQ12913 1337 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 FSD2A1L4K1 749 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 TRIM49BA6NDI0 452 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 C2orf71A6NGG8 1288 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 PPEF2O14830 753 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 ITGB3P05106 788 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 KRT19P08727 400 aa16.03■□□□□ 0.16
COL9A1-204ENST00000370496 CD44P16070 742 aaKnown RBP16.03■□□□□ 0.16
COL9A1-204ENST00000370496 BMP6P22004 513 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms