RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GLIS1Q8NBF1 620 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 AGAP11Q8TF27 550 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 DCLK3Q9C098 648 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 VPS37BQ9H9H4 285 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 ANKFY1Q9P2R3 1169 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 EXOC7Q9UPT5 735 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 PCDHB4Q9Y5E5 795 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 ATP8B3O60423 1300 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 MGRN1O60291 552 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SKAP2O75563 359 aaPredicted RBP12.91□□□□□ -0.34
CLIP3-201ENST00000360535 KRT16P08779 473 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 ITIH2P19823 946 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SLC8A1P32418 973 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 DYNLT1P63172 113 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 WDR44Q5JSH3 913 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 MROH7Q68CQ1 1323 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 MCOLN2Q8IZK6 566 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 FITM2Q8N6M3 262 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SLC17A8Q8NDX2 589 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 TMEM161BQ8NDZ6 487 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 NSMCE1Q8WV22 266 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SPIRE2Q8WWL2 714 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 PITPNM3Q9BZ71 974 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 SEPT9Q9UHD8 586 aaPredicted RBP12.91□□□□□ -0.34
CLIP3-201ENST00000360535 MCM8Q9UJA3 840 aa12.91□□□□□ -0.34
CLIP3-201ENST00000360535 FSCN2O14926 492 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 TP73O15350 636 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 P4HA2O15460 535 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 BANF1O75531 89 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 APBA3O96018 575 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 NQO1P15559 274 aaKnown RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 PIK3CAP42336 1068 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 NCALDP61601 193 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 MTERF2Q49AM1 385 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SWSAP1Q6NVH7 229 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 RBM15Q96T37 977 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF277Q9NRM2 450 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ADAM22Q9P0K1 906 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 KLHL14Q9P2G3 628 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SLC12A4Q9UP95 1085 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SPDYE2BA6NHP3 402 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 MYCNP04198 464 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SPDYE6P0CI01 402 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 TCF4P15884 667 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 PSMC5P62195 406 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 CYP1B1Q16678 543 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SYCP2LQ5T4T6 812 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SLC39A4Q6P5W5 647 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF449Q6P9G9 518 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 B3GNT9Q6UX72 402 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ANO5Q75V66 913 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ANKS1BQ7Z6G8 1248 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 CROCCP2Q86T23 111 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 VSIG1Q86XK7 387 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ATL2Q8NHH9 583 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SYTL5Q8TDW5 730 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 DDX1Q92499 740 aaKnown RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 P3H4Q92791 437 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ZBTB45Q96K62 511 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 WHRNQ9P202 907 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 FEM1BQ9UK73 627 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 UBR3Q6ZT12 1888 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 EXOC1LA0A1B0GW35 172 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 DIAPH2O60879 1101 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ANP32DO95626 131 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 RNASELQ05823 741 aaKnown RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 FASTKD3Q14CZ7 662 aaKnown RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 KRT27Q7Z3Y8 459 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 FAM160B2Q86V87 743 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ANKMY2Q8IV38 441 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 LARGE2Q8N3Y3 721 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SERPINB12Q96P63 405 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 OSBPL8Q9BZF1 889 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ROPN1BQ9BZX4 212 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 FHDC1Q9C0D6 1143 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ROPN1Q9HAT0 212 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-201ENST00000360535 SLCO1B3Q9NPD5 702 aa12.9□□□□□ -0.34
CLIP3-201ENST00000360535 ADGRA3Q8IWK6 1321 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 TLR3O15455 904 aaKnown RBP12.89□□□□□ -0.35
CLIP3-201ENST00000360535 GRIN3BO60391 1043 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ATP5DP30049 168 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 LIG4P49917 911 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 WNT7BP56706 349 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 CYP24A1Q07973 514 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 BRDTQ58F21 947 aaPredicted RBP12.89□□□□□ -0.35
CLIP3-201ENST00000360535 SCARA3Q6AZY7 606 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 MORC4Q8TE76 937 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 TMEM237Q96Q45 408 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 CCDC77Q9BR77 488 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 TRAIPQ9BWF2 469 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ETNK1Q9HBU6 452 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ICAM1P05362 532 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 COPS2P61201 443 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ALCAMQ13740 583 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 MYBPC2Q14324 1141 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 NLRX1Q86UT6 975 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 KCTD17Q8N5Z5 321 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ZNF516Q92618 1163 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 TMEM143Q96AN5 459 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 IWS1Q96ST2 819 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms