RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CGRRF1Q99675 332 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 ASB7Q9H672 318 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 INTS13Q9NVM9 706 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 MRPL42Q9Y6G3 142 aaKnown RBP19.64■□□□□ 0.74
HMGA1-201ENST00000311487 COL4A6Q14031 1691 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 FNDC1Q4ZHG4 1894 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-201ENST00000311487 CSPG5O95196 566 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 GNA14O95837 355 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 CST3P01034 146 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-201ENST00000311487 ITGB3P05106 788 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 KCNE1P15382 129 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 CLCN1P35523 988 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 CLCNKBP51801 687 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 KCNH2Q12809 1159 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 TDRD10Q5VZ19 366 aaKnown RBP19.64■□□□□ 0.73
HMGA1-201ENST00000311487 FAM193BQ96PV7 902 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-201ENST00000311487 NRDE2Q9H7Z3 1164 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 DPP3Q9NY33 737 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 PRG3Q9Y2Y8 225 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-201ENST00000311487 TRIOBPQ9H2D6 2365 aa19.64■□□□□ 0.73
HMGA1-201ENST00000311487 OR1G1P47890 313 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 ZBTB6Q15916 424 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 DUOXA2Q1HG44 320 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 SV2AQ7L0J3 742 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 FAM114A1Q8IWE2 563 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 C1orf127Q8N9H9 656 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 CRACR2AQ9BSW2 395 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 PI4K2AQ9BTU6 479 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 CERS4Q9HA82 394 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 RC3H2Q9HBD1 1191 aaKnown RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 METTL14Q9HCE5 456 aaKnown RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 TDRD15B5MCY1 1934 aaKnown RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 MAPK13O15264 365 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 HOXA2O43364 376 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 PHACTR2O75167 634 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 ITGB1P05556 798 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 CA3P07451 260 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 APBA1Q02410 837 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 MIIPQ5JXC2 388 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 TRAPPC11Q7Z392 1133 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 WDR49Q8IV35 697 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 TMC2Q8TDI7 906 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 NAP1L5Q96NT1 182 aaPredicted RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 RAD9AQ99638 391 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 YBX2Q9Y2T7 364 aaKnown RBP19.63■□□□□ 0.73
HMGA1-201ENST00000311487 INSL6Q9Y581 213 aa19.63■□□□□ 0.73
HMGA1-201ENST00000311487 PTMAP06454 111 aaKnown RBP19.62■□□□□ 0.73
HMGA1-201ENST00000311487 POLR2BP30876 1174 aaKnown RBP19.62■□□□□ 0.73
HMGA1-201ENST00000311487 GRIK3Q13003 919 aa19.62■□□□□ 0.73
HMGA1-201ENST00000311487 TMEM173Q86WV6 379 aaPredicted RBP19.62■□□□□ 0.73
HMGA1-201ENST00000311487 C3orf58Q8NDZ4 430 aa19.62■□□□□ 0.73
HMGA1-201ENST00000311487 PHOSPHO2Q8TCD6 241 aa19.62■□□□□ 0.73
HMGA1-201ENST00000311487 ANKRD36BP1Q96IX9 119 aa19.62■□□□□ 0.73
HMGA1-201ENST00000311487 CWH43Q9H720 699 aa19.62■□□□□ 0.73
HMGA1-201ENST00000311487 I3L4J1 428 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 SERPINC1P01008 464 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 TNNC2P02585 160 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 C4BPAP04003 597 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 EEF1GP26641 437 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 BMP8BP34820 402 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 MARSP56192 900 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 HTRA4P83105 476 aaPredicted RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 CD302Q8IX05 232 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 COLGALT2Q8IYK4 626 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 LRRC43Q8N309 656 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 TAS1R2Q8TE23 839 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 PBX4Q9BYU1 374 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 SIX4Q9UIU6 781 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 AGAP1Q9UPQ3 857 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 C2CD2Q9Y426 696 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 VNN1O95497 513 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 FMO5P49326 533 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 COPB1P53618 953 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 BCAR1P56945 870 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 CLDN10P78369 228 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 LRMPQ12912 555 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 VWA3BQ502W6 1294 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 APTXQ7Z2E3 356 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 BEST2Q8NFU1 509 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 CACTINQ8WUQ7 758 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 SEMA4DQ92854 862 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 PRO3102Q9H379 93 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 KANSL3Q9P2N6 904 aa19.61■□□□□ 0.73
HMGA1-201ENST00000311487 UBQLN1Q9UMX0 589 aaKnown RBP19.61■□□□□ 0.73
HMGA1-201ENST00000311487 AFPP02771 609 aaKnown RBP19.6■□□□□ 0.73
HMGA1-201ENST00000311487 SLC11A1P49279 550 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 MYL6P60660 151 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 TPM4P67936 248 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 TUSC3Q13454 348 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 SURF1Q15526 300 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 C9orf57Q5W0N0 161 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 SPOPLQ6IQ16 392 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 FIBCD1Q8N539 461 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 NDST4Q9H3R1 872 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 RNF216Q9NWF9 866 aaPredicted RBP19.6■□□□□ 0.73
HMGA1-201ENST00000311487 ZKSCAN5Q9Y2L8 839 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 GBF1Q92538 1859 aa19.6■□□□□ 0.73
HMGA1-201ENST00000311487 PODXLO00592 558 aa19.59■□□□□ 0.73
HMGA1-201ENST00000311487 NRP1O14786 923 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms