RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ATP6V1G2O95670 118 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 GEMIN4P57678 1058 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 STXBP2Q15833 593 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 EZH2Q15910 746 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 EPS8L3Q8TE67 593 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 MRPL4Q9BYD3 311 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 TBC1D23Q9NUY8 699 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 NARFQ9UHQ1 456 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 PPME1Q9Y570 386 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 SNRPAP09012 282 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 KCNA4P22459 653 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 DUOXA2Q1HG44 320 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 HABP4Q5JVS0 413 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 LBHD1Q9BQE6 289 aaPredicted RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 NBPF3Q9H094 633 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 DHX35Q9H5Z1 703 aaKnown RBP13.52□□□□□ -0.24
COL3A1-201ENST00000304636 ZNF302Q9NR11 478 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 MRGBPQ9NV56 204 aa13.52□□□□□ -0.24
COL3A1-201ENST00000304636 YWHABP31946 246 aaKnown RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 CACNB3P54284 484 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 DSG1Q02413 1049 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 TRADDQ15628 312 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 FASTKD1Q53R41 847 aaKnown RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 MEI1Q5TIA1 1274 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 TTC39BQ5VTQ0 682 aaPredicted RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 SWSAP1Q6NVH7 229 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 NSUN6Q8TEA1 469 aaKnown RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 EME1Q96AY2 570 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 MARCOQ9UEW3 520 aaPredicted RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 MAP2K7O14733 419 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 CAND2O75155 1236 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 NEK2P51955 445 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 SNRPFP62306 86 aaKnown RBP13.52□□□□□ -0.25
COL3A1-201ENST00000304636 ZBTB41Q5SVQ8 909 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 PACS2Q86VP3 889 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 AGXT2Q9BYV1 514 aa13.52□□□□□ -0.25
COL3A1-201ENST00000304636 PRPF39Q86UA1 669 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 PSPC1Q8WXF1 523 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 FAM8A1Q9UBU6 413 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 DDX20Q9UHI6 824 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 WEE2P0C1S8 567 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 KRT4P19013 534 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 PHKA2P46019 1235 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 SERPINB10P48595 397 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 ACTR2P61160 394 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 TSTA3Q13630 321 aaPredicted RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 SNRNP35Q16560 246 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 EEPD1Q7L9B9 569 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 ZNF677Q86XU0 584 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 AGR3Q8TD06 166 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 E7ENQ6 273 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 ADCY3O60266 1144 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 KDM1AO60341 852 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 COPB2P35606 906 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 KCNQ4P56696 695 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 EFHC2Q5JST6 749 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 NT5DC1Q5TFE4 455 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 E2F7Q96AV8 911 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 C18orf8Q96DM3 657 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 MRPL1Q9BYD6 325 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 ZNF446Q9NWS9 450 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 IL1RAPL1Q9NZN1 696 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 NDUFA13Q9P0J0 144 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 PCDHB2Q9Y5E7 798 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 SPATA31A3Q5VYP0 1347 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 OVOS2A0A0J9YW53 1432 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 OVOS2Q6IE36 1432 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 GLI1P08151 1106 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 SLC20A2Q08357 652 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 RCN1Q15293 331 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 KIRREL3Q8IZU9 778 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 DCLRE1BQ9H816 532 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 RAVER2Q9HCJ3 691 aaKnown RBP13.51□□□□□ -0.25
COL3A1-201ENST00000304636 RAB6BQ9NRW1 208 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 KBTBD4Q9NVX7 518 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 WHRNQ9P202 907 aa13.51□□□□□ -0.25
COL3A1-201ENST00000304636 PTPRMP28827 1452 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 A0A0A6YYK5 440 aaPredicted RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 SPDYE2BA6NHP3 402 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 SPDYE6P0CI01 402 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 RPA1P27694 616 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 FRA10AC1Q70Z53 315 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 THAP2Q9H0W7 228 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 PCMTD2Q9NV79 361 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 AURKCQ9UQB9 309 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 FNDC3AQ9Y2H6 1198 aaKnown RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 LMTK2Q8IWU2 1503 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 APRTP07741 180 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 MAP4P27816 1152 aaKnown RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 SSTR3P32745 418 aaPredicted RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 NLRP11P59045 1033 aaKnown RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 AENQ8WTP8 325 aaKnown RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 PPP1R16BQ96T49 567 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 GTF3C4Q9UKN8 822 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 CHMP2BQ9UQN3 213 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 PCDHA10Q9Y5I2 948 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 F5H423 210 aaPredicted RBP13.5□□□□□ -0.25
COL3A1-201ENST00000304636 PDHBP11177 359 aa13.5□□□□□ -0.25
COL3A1-201ENST00000304636 TROAPQ12815 778 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms