RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 G3BP2Q9UN86 482 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 V9GY48 417 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 C3P01024 1663 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MYOM1P52179 1685 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ATP6V1C1P21283 382 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PRIM2P49643 509 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PMS1P54277 932 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ODR4Q5SWX8 454 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RNF219Q5W0B1 726 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TRIM68Q6AZZ1 485 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 REXO1L1PQ8IX06 675 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KLHL7Q8IXQ5 586 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NSL1Q96IY1 281 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TEKT3Q9BXF9 490 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KLHL31Q9H511 634 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GPBP1L1Q9HC44 474 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 FAM207AQ9NSI2 230 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TLR7Q9NYK1 1049 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CITO14578 2027 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 A0A087WXM4 84 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 H0Y3Z8 333 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 IRS4O14654 1257 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MAGEB2O15479 319 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KDM1AO60341 852 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ERN1O75460 977 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ECM2O94769 699 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 IDO1P14902 403 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KYNUQ16719 465 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PM20D2Q8IYS1 436 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KCNF1Q9H3M0 494 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RNPEPL1Q9HAU8 725 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 AVENQ9NQS1 362 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TRAF3IP3Q9Y228 551 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RTN2O75298 545 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SERPINB1P30740 379 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KRT76Q01546 638 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SLC12A1Q13621 1099 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GRM4Q14833 912 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PHKG1Q16816 387 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 FAM92BQ6ZTR7 304 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF467Q7Z7K2 595 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GPBP1Q86WP2 473 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 U2AF1L4Q8WU68 220 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CNKSR1Q969H4 720 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 HINFPQ9BQA5 517 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PRRG3Q9BZD7 231 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 VPS11Q9H270 941 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GIN1Q9NXP7 522 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KCNK4Q9NYG8 393 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ADRA2BP18089 450 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GUCA1AP43080 201 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MAGEA8P43361 318 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SCTRP47872 440 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 VSNL1P62760 191 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MAPK7Q13164 816 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NFIL3Q16649 462 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NUDT18Q6ZVK8 323 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NELFCDQ8IXH7 590 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GOLM1Q8NBJ4 401 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TATDN2Q93075 761 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 OXCT2Q9BYC2 517 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 C6orf203Q9P0P8 240 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NOVA2Q9UNW9 492 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CLCA2Q9UQC9 943 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KNDC1Q76NI1 1749 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SORBS3O60504 671 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PTCD1O75127 700 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 OGNP20774 298 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KCNA3P22001 575 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KRT20P35900 424 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TNFAIP2Q03169 654 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ARID5BQ14865 1188 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 MTX3Q5HYI7 312 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 METTL21CQ5VZV1 264 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 C11orf88Q6PI97 169 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 HAUS6Q7Z4H7 955 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CCDC33Q8N5R6 958 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SETD9Q8NE22 299 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GANQ9H2C0 597 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 MBD2Q9UBB5 411 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 IDH3BO43837 385 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 FGGP02679 453 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 YARSP54577 528 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CTSWP56202 376 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SP4Q02446 784 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TAB1Q15750 504 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CCDC153Q494R4 210 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ELMOD1Q8N336 334 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PNMA1Q8ND90 353 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RFWD2Q8NHY2 731 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF184Q99676 751 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 C1orf50Q9BV19 199 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 FHDC1Q9C0D6 1143 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 LRMDAQ9H2I8 198 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM245Q9H330 911 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF304Q9HCX3 659 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GDF3Q9NR23 364 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 HESX1Q9UBX0 185 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TMED5Q9Y3A6 229 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 C5orf60A6NFR6 353 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms