RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C11orf70Q9BRQ4 267 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 HERPUD2Q9BSE4 406 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 MTUS1Q9ULD2 1270 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 NOVA2Q9UNW9 492 aaKnown RBP21.44■■□□□ 1.02
VPS53-201ENST00000291074 CNTNAP2Q9UHC6 1331 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 ADM5C9JUS6 153 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 ABCD1P33897 745 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 TCF7P36402 384 aaPredicted RBP21.43■■□□□ 1.02
VPS53-201ENST00000291074 TNFSF9P41273 254 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 NSFP46459 744 aaKnown RBP21.43■■□□□ 1.02
VPS53-201ENST00000291074 STAT5BP51692 787 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 TARBP2Q15633 366 aaKnown RBP21.43■■□□□ 1.02
VPS53-201ENST00000291074 RUFY4Q6ZNE9 571 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 TRIM50Q86XT4 487 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 RIOX2Q8IUF8 465 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 ADGRA2Q96PE1 1338 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 O00370 1275 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 SEC24CP53992 1094 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 DRG2P55039 364 aaKnown RBP21.43■■□□□ 1.02
VPS53-201ENST00000291074 IFFO1Q0D2I5 559 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 SNX1Q13596 522 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 SLFN12LQ6IEE8 588 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 ZBTB33Q86T24 672 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 CGRRF1Q99675 332 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 SPATC1LQ9H0A9 340 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 LRRC37A2A6NM11 1700 aa21.43■■□□□ 1.02
VPS53-201ENST00000291074 NDUFAB1O14561 156 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 CYP1A1P04798 512 aaPredicted RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 PMS2P54278 862 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 NOP14P78316 857 aaKnown RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 CENPCQ03188 943 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 MON1BQ7L1V2 547 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 PAPPA2Q9BXP8 1791 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 MCM3APO60318 1980 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 ERLIN2O94905 339 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 EDNRBP24530 442 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 GNA15P30679 374 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 PRPF31Q8WWY3 499 aaKnown RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 ATG4AQ8WYN0 398 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 RNF25Q96BH1 459 aaPredicted RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 AVENQ9NQS1 362 aaPredicted RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 KCNG1Q9UIX4 513 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 ADCY3O60266 1144 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 ARIH2O95376 493 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 GJB6O95452 261 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 CLTAP09496 248 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 PTGISQ16647 500 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 ODF2Q5BJF6 829 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 ZNF677Q86XU0 584 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 RBBP8NLQ8NC74 664 aaPredicted RBP21.42■■□□□ 1.02
VPS53-201ENST00000291074 FAM81BQ96LP2 452 aa21.42■■□□□ 1.02
VPS53-201ENST00000291074 PODXLO00592 558 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 PGK2P07205 417 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 TMOD1P28289 359 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 RFC5P40937 340 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 MAGOHP61326 146 aaKnown RBP21.41■■□□□ 1.02
VPS53-201ENST00000291074 UHMK1Q8TAS1 419 aaKnown RBP21.41■■□□□ 1.02
VPS53-201ENST00000291074 NRBP2Q9NSY0 501 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 IRF6O14896 467 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 BPIFB4P59827 614 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 NOMO3P69849 1222 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 SGO2Q562F6 1265 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 AGBL2Q5U5Z8 902 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 OTUD5Q96G74 571 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 ZNF668Q96K58 619 aaPredicted RBP21.41■■□□□ 1.02
VPS53-201ENST00000291074 PABPC3Q9H361 631 aaKnown RBP21.41■■□□□ 1.02
VPS53-201ENST00000291074 SEMA4AQ9H3S1 761 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 ELP3Q9H9T3 547 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 CHST7Q9NS84 486 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 SLC12A6Q9UHW9 1150 aa21.41■■□□□ 1.02
VPS53-201ENST00000291074 FEZ2Q9UHY8 353 aaPredicted RBP21.41■■□□□ 1.02
VPS53-201ENST00000291074 A6NNZ2 444 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 EBAG9O00559 213 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 CAND2O75155 1236 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 DDNO94850 711 aaPredicted RBP21.4■■□□□ 1.02
VPS53-201ENST00000291074 LDHAP00338 332 aaKnown RBP21.4■■□□□ 1.02
VPS53-201ENST00000291074 NF2P35240 595 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 NCOA4Q13772 614 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 TUBB8Q3ZCM7 444 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 LRRC71Q8N4P6 559 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 EPN3Q9H201 632 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 CSADQ9Y600 493 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 DICER1Q9UPY3 1922 aaKnown RBP21.4■■□□□ 1.02
VPS53-201ENST00000291074 FSCN2O14926 492 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 THAP12O43422 761 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 SRGAP2CP0DJJ0 459 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 FGFR4P22455 802 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 MMS22LQ6ZRQ5 1243 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 EFCAB13Q8IY85 973 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 ABRAQ8N0Z2 381 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 C12orf50Q8NA57 414 aaPredicted RBP21.4■■□□□ 1.02
VPS53-201ENST00000291074 KCNN1Q92952 543 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 FAM212AQ96EL1 285 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 CLMNQ96JQ2 1002 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 TMEM134Q9H6X4 195 aa21.4■■□□□ 1.02
VPS53-201ENST00000291074 SMIM23A6NLE4 172 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 MAFO75444 373 aaPredicted RBP21.39■■□□□ 1.01
VPS53-201ENST00000291074 CST3P01034 146 aaPredicted RBP21.39■■□□□ 1.01
VPS53-201ENST00000291074 PPP1R7Q15435 360 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 FAM160B1Q5W0V3 765 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms