RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 KCNB1Q14721 858 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 PTPN14Q15678 1187 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 NAB2Q15742 525 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 SNRNP35Q16560 246 aaKnown RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 UPP1Q16831 310 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 BMT2Q1RMZ1 405 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 USP41Q3LFD5 358 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 ZNF658Q5TYW1 1059 aaPredicted RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 LMBRD2Q68DH5 695 aaPredicted RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 KLHL10Q6JEL2 608 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 DCLRE1AQ6PJP8 1040 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 PRSS55Q6UWB4 352 aaPredicted RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 ALKAL1Q6UXT8 129 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 DSTYKQ6XUX3 929 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 TAS1R1Q7RTX1 841 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 BRSK2Q8IWQ3 736 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.08□□□□□ -1.28
CD44-204ENST00000279452 TMEM130Q8N3G9 435 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 XXYLT1Q8NBI6 393 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 ANKRD36BP1Q96IX9 119 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 GSDMAQ96QA5 445 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 FNBP1Q96RU3 617 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 TSG101Q99816 390 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 APOL5Q9BWW9 433 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 VN1R3Q9BXE9 311 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 GPR62Q9BZJ7 368 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 ASB7Q9H672 318 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 UBE2ZQ9H832 354 aaPredicted RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 KIAA1586Q9HCI6 787 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 PDE11AQ9HCR9 933 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 DPP3Q9NY33 737 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 CGNQ9P2M7 1197 aaKnown RBP7.08□□□□□ -1.28
CD44-204ENST00000279452 FRMD4BQ9Y2L6 1034 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 PCDHA5Q9Y5H7 936 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 MYH11P35749 1972 aa7.08□□□□□ -1.28
CD44-204ENST00000279452 FSD2A1L4K1 749 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 C2orf71A6NGG8 1288 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 PDXKO00764 312 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 PSMA7O14818 248 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 FSCN2O14926 492 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 NCK2O43639 380 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 PHACTR2O75167 634 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 NR3C1P04150 777 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 ITGB3P05106 788 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 ADH1AP07327 375 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 ADRB2P07550 413 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 RPL17P18621 184 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 CYP3A5P20815 502 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 NR2F2P24468 414 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 TKTP29401 623 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 POLR2BP30876 1174 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 RPL9P32969 192 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 SNRPFP62306 86 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 RBM10P98175 930 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 CREMQ03060 361 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 BFSP1Q12934 665 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 BIRC3Q13489 604 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 SURF1Q15526 300 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 PSMD5Q16401 504 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 DUSP6Q16828 381 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 AAK1Q2M2I8 961 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 XKR4Q5GH76 650 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 RTP2Q5QGT7 225 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 SPATA1Q5VX52 437 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 ELMSAN1Q6PJG2 1045 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 CRELD2Q6UXH1 353 aaPredicted RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 USP37Q86T82 979 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 EFCAB13Q8IY85 973 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 GUF1Q8N442 669 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 MRPL43Q8N983 215 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 C3orf58Q8NDZ4 430 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 CACTINQ8WUQ7 758 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 PABPC5Q96DU9 382 aaKnown RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 FAM84AQ96KN4 292 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 ZNF560Q96MR9 790 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 TSPAN18Q96SJ8 248 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 CDCA3Q99618 268 aaPredicted RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 TTPALQ9BTX7 342 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 MTMR12Q9C0I1 747 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 NUP62CLQ9H1M0 184 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 MMRN2Q9H8L6 949 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 MAN1B1Q9UKM7 699 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 BARX2Q9UMQ3 279 aaPredicted RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 COG5Q9UP83 839 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 DERAQ9Y315 318 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 C2CD2Q9Y426 696 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.07□□□□□ -1.28
CD44-204ENST00000279452 LAMA3Q16787 3333 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 PLXNA4Q9HCM2 1894 aa7.07□□□□□ -1.28
CD44-204ENST00000279452 TMEM189-UBE2V1I3L0A0 370 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 PPEF2O14830 753 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 TEX28O15482 410 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 CLASP2O75122 1294 aaKnown RBP7.06□□□□□ -1.28
CD44-204ENST00000279452 TBX10O75333 385 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 GLUD1P00367 558 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 CNPP09543 421 aaKnown RBP7.06□□□□□ -1.28
CD44-204ENST00000279452 SPATA31D3P0C874 917 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 ODC1P11926 461 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 KRT13P13646 458 aa7.06□□□□□ -1.28
CD44-204ENST00000279452 CPB1P15086 417 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms