RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 DYNC1LI2O43237 492 aaPredicted RBP16.41■□□□□ 0.22
SF3B4-201ENST00000271628 B4GALT5O43286 388 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 SLC10A3P09131 477 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 LMAN1P49257 510 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 GYS2P54840 703 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 NOP14P78316 857 aaKnown RBP16.41■□□□□ 0.22
SF3B4-201ENST00000271628 ZSCAN26Q16670 478 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 SGSM1Q2NKQ1 1148 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 NT5DC3Q86UY8 548 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 ZNF410Q86VK4 478 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 THNSL1Q8IYQ7 743 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 SOCS4Q8WXH5 440 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 FAM212AQ96EL1 285 aa16.41■□□□□ 0.22
SF3B4-201ENST00000271628 ZNF668Q96K58 619 aaPredicted RBP16.41■□□□□ 0.22
SF3B4-201ENST00000271628 CWC15Q9P013 229 aaKnown RBP16.41■□□□□ 0.22
SF3B4-201ENST00000271628 GNEQ9Y223 722 aaKnown RBP16.41■□□□□ 0.22
SF3B4-201ENST00000271628 KAT6AQ92794 2004 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 KCNK3O14649 394 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 BUB1BO60566 1050 aaPredicted RBP16.4■□□□□ 0.22
SF3B4-201ENST00000271628 CLTAP09496 248 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 IQCF3P0C7M6 154 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 MCF2P10911 925 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 RGS2P41220 211 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 SREBF2Q12772 1141 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 OLFML2BQ68BL8 750 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 ACAD10Q6JQN1 1059 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 USP6NLQ92738 828 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 ARHGEF26Q96DR7 871 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 ANKRD36BP1Q96IX9 119 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 CDT1Q9H211 546 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 RPF1Q9H9Y2 349 aaKnown RBP16.4■□□□□ 0.22
SF3B4-201ENST00000271628 ACP6Q9NPH0 428 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 CTTNBP2NLQ9P2B4 639 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 CNTN6Q9UQ52 1028 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 STXBP5LQ9Y2K9 1186 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 FAN1Q9Y2M0 1017 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 NRCAMQ92823 1304 aa16.4■□□□□ 0.22
SF3B4-201ENST00000271628 ASS1P00966 412 aaKnown RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 CST3P01034 146 aaPredicted RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 VTNP04004 478 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 TMEM191BP0C7N4 346 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 ACO1P21399 889 aaKnown RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 ACTN2P35609 894 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 C2orf54Q08AI8 447 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 TRPC3Q13507 836 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 GLE1Q53GS7 698 aaKnown RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 MARCH8Q5T0T0 291 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 SPOPLQ6IQ16 392 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 NLRP7Q8WX94 980 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 HES6Q96HZ4 224 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 FAM84AQ96KN4 292 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 APOBEC3GQ9HC16 384 aaKnown RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 MTA2O94776 668 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 TNNC2P02585 160 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 ZNF865P0CJ78 1059 aaPredicted RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 AMHR2Q16671 573 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 EEF1DP3Q658K8 133 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 PPP1R2P3Q6NXS1 205 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 CCNI2Q6ZMN8 369 aaPredicted RBP16.39■□□□□ 0.21
SF3B4-201ENST00000271628 ACTRT1Q8TDG2 376 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 MTMR12Q9C0I1 747 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 GTF3C4Q9UKN8 822 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 Q9Y3F1 56 aa16.39■□□□□ 0.21
SF3B4-201ENST00000271628 ADCY6O43306 1168 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 CLSTN1O94985 981 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 F2P00734 622 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 CPT1AP50416 773 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 DNA2P51530 1060 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 CLEC16AQ2KHT3 1053 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 PRAMEF19Q5SWL8 479 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 LEKR1Q6ZMV7 388 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 TLK2Q86UE8 772 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 KIAA0319LQ8IZA0 1049 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 ELMO3Q96BJ8 720 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 MS4A14Q96JA4 679 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 SCLT1Q96NL6 688 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 UVRAGQ9P2Y5 699 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 NUB1Q9Y5A7 615 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 PCDHB4Q9Y5E5 795 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 DOCK3Q8IZD9 2030 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 RPS6KA5O75582 802 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 ERLIN2O94905 339 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 UNGP13051 313 aaPredicted RBP16.38■□□□□ 0.21
SF3B4-201ENST00000271628 TFAMQ00059 246 aaKnown RBP16.38■□□□□ 0.21
SF3B4-201ENST00000271628 C11orf63Q6NUN7 778 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 TMEM270Q6UE05 265 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 TRIM72Q6ZMU5 477 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 TRIM11Q96F44 468 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 FAXDC2Q96IV6 333 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 APBA2Q99767 749 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 GOLPH3Q9H4A6 298 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 ASB7Q9H672 318 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 FLRT1Q9NZU1 646 aa16.38■□□□□ 0.21
SF3B4-201ENST00000271628 GPR25O00155 361 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 TNPO2O14787 897 aaKnown RBP16.37■□□□□ 0.21
SF3B4-201ENST00000271628 CYP1A2P05177 515 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 CAPN2P17655 700 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 ARF4P18085 180 aaPredicted RBP16.37■□□□□ 0.21
SF3B4-201ENST00000271628 CYP2B6P20813 491 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 TNNT3P45378 269 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms