RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 TAOK3Q9H2K8 898 aa13.83□□□□□ -0.2
SNX1-201ENST00000261889 CHKBQ9Y259 395 aa13.83□□□□□ -0.2
SNX1-201ENST00000261889 ARL2BPQ9Y2Y0 163 aa13.83□□□□□ -0.2
SNX1-201ENST00000261889 BRCA2P51587 3418 aa13.83□□□□□ -0.2
SNX1-201ENST00000261889 SLC16A3O15427 465 aaKnown RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 SREBF1P36956 1147 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 SLC1A5Q15758 541 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 TXNRD3NBQ6F5E7 133 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ZNF365Q70YC5 407 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ARMC9Q7Z3E5 817 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 RBM15Q96T37 977 aaKnown RBP eCLIP13.82□□□□□ -0.2
SNX1-201ENST00000261889 EBF2Q9HAK2 575 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 FAM198AQ9UFP1 575 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 FRMPD4Q14CM0 1322 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 TTC4O95801 387 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ATP2B4P23634 1241 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 PIK3CAP42336 1068 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 RHOT2Q8IXI1 618 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 FBXO6Q9NRD1 293 aaPredicted RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 SLC5A4Q9NY91 659 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ARMCX1Q9P291 453 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 DPPA5A6NC42 116 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 IPO5O00410 1097 aaKnown RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 EIF2AK2P19525 551 aaKnown RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 SPP2Q13103 211 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ZNF268Q14587 947 aaPredicted RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 CRYMQ14894 314 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 SMTNL2Q2TAL5 461 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 CCDC33Q8N5R6 958 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.82□□□□□ -0.22e-6■■■■■ 29
SNX1-201ENST00000261889 NOCTQ9UK39 431 aaKnown RBP13.82□□□□□ -0.2
SNX1-201ENST00000261889 PHTF1Q9UMS5 762 aa13.82□□□□□ -0.2
SNX1-201ENST00000261889 ADAMTSL1Q8N6G6 1762 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 CFAP69A5D8W1 941 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 hCG_1984214I3L0E3 225 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 RAD17O75943 681 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 ALDH1B1P30837 517 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 WNT7BP56706 349 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 ORC2Q13416 577 aaPredicted RBP13.81□□□□□ -0.2
SNX1-201ENST00000261889 TAF1BQ53T94 588 aaPredicted RBP13.81□□□□□ -0.2
SNX1-201ENST00000261889 CYFIP1Q7L576 1253 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 MTDHQ86UE4 582 aaKnown RBP13.81□□□□□ -0.2
SNX1-201ENST00000261889 ZBED8Q8IZ13 594 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 ZNF713Q8N859 430 aaPredicted RBP13.81□□□□□ -0.2
SNX1-201ENST00000261889 MKNK1Q9BUB5 465 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 PCYOX1Q9UHG3 505 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 F5H423 210 aaPredicted RBP13.81□□□□□ -0.2
SNX1-201ENST00000261889 PODXLO00592 558 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 NEFHP12036 1026 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 SMARCA1P28370 1054 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 KIF22Q14807 665 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 SLMAPQ14BN4 828 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 MIS18BP1Q6P0N0 1132 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 TTC7BQ86TV6 843 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 CKAP2Q8WWK9 683 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 ZNF148Q9UQR1 794 aa13.81□□□□□ -0.2
SNX1-201ENST00000261889 PLS3P13797 630 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 SSTR1P30872 391 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 RNF220Q5VTB9 566 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 PCNX4Q63HM2 1172 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 HAUS6Q7Z4H7 955 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 FAM13CQ8NE31 585 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 SHKBP1Q8TBC3 707 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 CRYGNQ8WXF5 182 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 CSRNP1Q96S65 589 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 OLFML3Q9NRN5 406 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 PPEF1O14829 653 aaPredicted RBP13.8□□□□□ -0.2
SNX1-201ENST00000261889 ACOT2P49753 483 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 ORC1Q13415 861 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 KCNT1Q5JUK3 1230 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 DSTYKQ6XUX3 929 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 SLF2Q8IX21 1173 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 CENPTQ96BT3 561 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 FAM213AQ9BRX8 229 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 ZNF395Q9H8N7 513 aaPredicted RBP13.8□□□□□ -0.2
SNX1-201ENST00000261889 MARCOQ9UEW3 520 aaPredicted RBP13.8□□□□□ -0.2
SNX1-201ENST00000261889 NFIBO00712 420 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 SOCS7O14512 581 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 PSMD10O75832 226 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 ITGB5P18084 799 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 ADRA1DP25100 572 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 PRELPP51888 382 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 RPL7AP62424 266 aaKnown RBP13.8□□□□□ -0.2
SNX1-201ENST00000261889 LRRC36Q1X8D7 754 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 MIER3Q7Z3K6 550 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 RPS6KC1Q96S38 1066 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 TMEM121Q9BTD3 319 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 TBC1D10AQ9BXI6 508 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 GTF3C4Q9UKN8 822 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 DNPEPQ9ULA0 475 aa13.8□□□□□ -0.2
SNX1-201ENST00000261889 PIK3R2O00459 728 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 OAS1P00973 400 aaKnown RBP13.79□□□□□ -0.2
SNX1-201ENST00000261889 LINGO3P0C6S8 592 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 CYP3A7P24462 503 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 IVDP26440 423 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 ADSSP30520 456 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 GCLCP48506 637 aaPredicted RBP13.79□□□□□ -0.2
SNX1-201ENST00000261889 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
SNX1-201ENST00000261889 ALCAMQ13740 583 aa13.79□□□□□ -0.2
SNX1-201ENST00000261889 SNRNP35Q16560 246 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms