RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.48□□□□□ -0.095e-8■■□□□ 11.5
LDLR-201ENST00000252444 CNTNAP2Q9UHC6 1331 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 CCDC151A5D8V7 595 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 ERBB2P04626 1255 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 LGALS2P05162 132 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 RECQLP46063 649 aaPredicted RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 RAB44Q7Z6P3 723 aaPredicted RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 FAM96AQ9H5X1 160 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 SIPA1L3O60292 1781 aaPredicted RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 NPHP3-ACAD11A0A0J9YXS1 232 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 PAEPP09466 180 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 THPOP40225 353 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 CCDC15Q0P6D6 951 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 GRIK5Q16478 980 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 TTI2Q6NXR4 508 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 VCPIP1Q96JH7 1222 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 FBXL5Q9UKA1 691 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 IFNB1P01574 187 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 FTLP02792 175 aaPredicted RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 UBA1P22314 1058 aaKnown RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 SLC12A3P55017 1021 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 ZBTB16Q05516 673 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 FUT2Q10981 343 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 BRSK2Q8IWQ3 736 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 PPP4R1Q8TF05 950 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 KRT15P19012 456 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 OXCT1P55809 520 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 WDR72Q3MJ13 1102 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 CDKAL1Q5VV42 579 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 PDIK1LQ8N165 341 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TJP1Q07157 1748 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 FAM86B1E9PN63 330 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 FAM86B2P0C5J1 330 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 ARL4CP56559 192 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 GCNT1Q02742 428 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 ITKQ08881 620 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 GTF3C4Q9UKN8 822 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TNFSF13BQ9Y275 285 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TLDC2A0PJX2 215 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TTI1O43156 1089 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 CENPCQ03188 943 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TMEM132BQ14DG7 1078 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 CCDC121Q6ZUS5 278 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 MICAL1Q8TDZ2 1067 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 DNAJC7Q99615 494 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TRIM49P0CI25 452 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TRIM49CP0CI26 452 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 TROVE2P10155 538 aaKnown RBP eCLIP14.47□□□□□ -0.09
LDLR-201ENST00000252444 DUSP28Q4G0W2 176 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 ACRBPQ8NEB7 543 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 PNMA5Q96PV4 448 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 PPP1R16BQ96T49 567 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 GMLQ99445 158 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 CATSPERBQ9H7T0 1116 aa14.47□□□□□ -0.09
LDLR-201ENST00000252444 CCDC88AQ3V6T2 1871 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 EBAG9O00559 213 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 PGK2P07205 417 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 GABPB1Q06547 395 aaPredicted RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 MAP7D1Q3KQU3 841 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 ITIH5Q86UX2 942 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 C7orf43Q8WVR3 580 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 ST6GALNAC4Q9H4F1 302 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 PPANQ9NQ55 473 aaKnown RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 SMIM35A0A1B0GVV1 85 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 PSTPIP1O43586 416 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 ARPP19P56211 112 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 PAIP2Q9BPZ3 127 aaKnown RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 FAM200BP0CF97 657 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 INSRRP14616 1297 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 SMARCB1Q12824 385 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 KRT71Q3SY84 523 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 USP13Q92995 863 aaPredicted RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 CALN1Q9BXU9 219 aa14.46□□□□□ -0.09
LDLR-201ENST00000252444 OLA1Q9NTK5 396 aaKnown RBP14.46□□□□□ -0.09
LDLR-201ENST00000252444 GMNNO75496 209 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 THP07101 528 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 GNL1P36915 607 aaPredicted RBP14.46□□□□□ -0.1
LDLR-201ENST00000252444 GTF2BQ00403 316 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 ADCY2Q08462 1091 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 E2F4Q16254 413 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 KLHL38Q2WGJ6 581 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 ZNF280DQ6N043 979 aa14.46□□□□□ -0.1
LDLR-201ENST00000252444 FOXN1O15353 648 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 RNF40O75150 1001 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 INHBAP08476 426 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 KRT3P12035 628 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 FAM102AQ5T9C2 384 aaPredicted RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 OLFML2BQ68BL8 750 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 SCN4BQ8IWT1 228 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 ETNPPLQ8TBG4 499 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 C11orf70Q9BRQ4 267 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 FAM8A1Q9UBU6 413 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 APOL1O14791 398 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 BCAT1P54687 386 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 POU5F1BQ06416 359 aa14.45□□□□□ -0.1
LDLR-201ENST00000252444 UAP1Q16222 522 aaPredicted RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 PREPLQ4J6C6 727 aaPredicted RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 TARS2Q9BW92 718 aaKnown RBP14.45□□□□□ -0.1
LDLR-201ENST00000252444 SNX9Q9Y5X1 595 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms