RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 IFT20Q8IY31 132 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 HDAC7Q8WUI4 952 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 FAM212AQ96EL1 285 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 KRT12Q99456 494 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 VIPAS39Q9H9C1 493 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 NUB1Q9Y5A7 615 aa24.92■■□□□ 1.58
MSX2-201ENST00000239243 B4GALT4O60513 344 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 MMP3P08254 477 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 TMEM191BP0C7N4 346 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 UNGP13051 313 aaPredicted RBP24.91■■□□□ 1.58
MSX2-201ENST00000239243 POU5F1Q01860 360 aaKnown RBP24.91■■□□□ 1.58
MSX2-201ENST00000239243 SMC1AQ14683 1233 aaKnown RBP24.91■■□□□ 1.58
MSX2-201ENST00000239243 SGSM1Q2NKQ1 1148 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 ZNF564Q8TBZ8 553 aaPredicted RBP24.91■■□□□ 1.58
MSX2-201ENST00000239243 NUP85Q9BW27 656 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 UBXN6Q9BZV1 441 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 MTMR12Q9C0I1 747 aa24.91■■□□□ 1.58
MSX2-201ENST00000239243 TNNC2P02585 160 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 HUNKP57058 714 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 TRPC3Q13507 836 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 MTHFD1LQ6UB35 978 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 TMEM270Q6UE05 265 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 THNSL1Q8IYQ7 743 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 ANKRD36BP1Q96IX9 119 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 CDT1Q9H211 546 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 MINDY3Q9H8M7 445 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 B4GALT5O43286 388 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 PPFIA1Q13136 1202 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 KYAT1Q16773 422 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 ZBTB10Q96DT7 871 aa24.9■■□□□ 1.58
MSX2-201ENST00000239243 ZNF668Q96K58 619 aaPredicted RBP24.9■■□□□ 1.58
MSX2-201ENST00000239243 RPF1Q9H9Y2 349 aaKnown RBP24.9■■□□□ 1.58
MSX2-201ENST00000239243 HOXC6P09630 235 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 MCF2P10911 925 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 GNA15P30679 374 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 SLC7A5Q01650 507 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 CST9Q5W186 159 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 RBBP8NLQ8NC74 664 aaPredicted RBP24.89■■□□□ 1.58
MSX2-201ENST00000239243 NPLOC4Q8TAT6 608 aa24.89■■□□□ 1.58
MSX2-201ENST00000239243 AVENQ9NQS1 362 aaPredicted RBP24.89■■□□□ 1.58
MSX2-201ENST00000239243 CNOT8Q9UFF9 292 aaKnown RBP24.89■■□□□ 1.58
MSX2-201ENST00000239243 A0A087WZ62 844 aa24.89■■□□□ 1.57
MSX2-201ENST00000239243 MANSC4A6NHS7 340 aaPredicted RBP24.89■■□□□ 1.57
MSX2-201ENST00000239243 KRIT1O00522 736 aa24.89■■□□□ 1.57
MSX2-201ENST00000239243 CYP1A1P04798 512 aaPredicted RBP24.89■■□□□ 1.57
MSX2-201ENST00000239243 TNNT3P45378 269 aaPredicted RBP24.89■■□□□ 1.57
MSX2-201ENST00000239243 NSFP46459 744 aaKnown RBP24.89■■□□□ 1.57
MSX2-201ENST00000239243 EEF1DP3Q658K8 133 aa24.89■■□□□ 1.57
MSX2-201ENST00000239243 FDXACB1Q9BRP7 624 aaPredicted RBP24.89■■□□□ 1.57
MSX2-201ENST00000239243 NIF3L1Q9GZT8 377 aa24.89■■□□□ 1.57
MSX2-201ENST00000239243 WNT8AQ9H1J5 351 aa24.89■■□□□ 1.57
MSX2-201ENST00000239243 HEXIM1O94992 359 aaKnown RBP24.88■■□□□ 1.57
MSX2-201ENST00000239243 TFAMQ00059 246 aaKnown RBP24.88■■□□□ 1.57
MSX2-201ENST00000239243 CENPCQ03188 943 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 MESDQ14696 234 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 GRIK4Q16099 956 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 GLIPR1L2Q4G1C9 344 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 AENQ8WTP8 325 aaKnown RBP24.88■■□□□ 1.57
MSX2-201ENST00000239243 FAM170AA1A519 330 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 ATMINO43313 823 aaPredicted RBP24.88■■□□□ 1.57
MSX2-201ENST00000239243 CST3P01034 146 aaPredicted RBP24.88■■□□□ 1.57
MSX2-201ENST00000239243 EPHB4P54760 987 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 PPP2R5EQ16537 467 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 EMBQ6PCB8 327 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 GDF3Q9NR23 364 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 CPA4Q9UI42 421 aa24.88■■□□□ 1.57
MSX2-201ENST00000239243 GABPB1Q06547 395 aaPredicted RBP24.87■■□□□ 1.57
MSX2-201ENST00000239243 MAP2K5Q13163 448 aa24.87■■□□□ 1.57
MSX2-201ENST00000239243 MCOLN2Q8IZK6 566 aa24.87■■□□□ 1.57
MSX2-201ENST00000239243 RNPC3Q96LT9 517 aaKnown RBP24.87■■□□□ 1.57
MSX2-201ENST00000239243 SLITRK6Q9H5Y7 841 aa24.87■■□□□ 1.57
MSX2-201ENST00000239243 RRN3P2A6NIE6 340 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 IQCF3P0C7M6 154 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 MYBL2P10244 700 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 MYL6P60660 151 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 AMHR2Q16671 573 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 MORN1Q5T089 497 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 ZNF410Q86VK4 478 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 KLHL7Q8IXQ5 586 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 UBR7Q8N806 425 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 ZSWIM1Q9BR11 485 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 UMODL1Q5DID0 1318 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 FGGP02679 453 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 COMTP21964 271 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 YWHAEP62258 255 aaKnown RBP24.86■■□□□ 1.57
MSX2-201ENST00000239243 NLRP7Q8WX94 980 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 VCPIP1Q96JH7 1222 aa24.86■■□□□ 1.57
MSX2-201ENST00000239243 TRPM7Q96QT4 1865 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 GOLGA6L10A0A0M3HER8 536 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 CCDC66A2RUB6 948 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 TMEM110-MUSTN1A8MSY1 372 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 VTNP04004 478 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 ZNF132P52740 706 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 OSTNP61366 133 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 ZNF699Q32M78 642 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 DCAF12L1Q5VU92 463 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 RASAL3Q86YV0 1011 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 EFCAB13Q8IY85 973 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 CEP120Q8N960 986 aa24.85■■□□□ 1.57
MSX2-201ENST00000239243 FAXDC2Q96IV6 333 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms