RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 TMEM132DQ14C87 1099 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 THEMIS2Q5TEJ8 643 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 RRM2BQ7LG56 351 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 OTUB1Q96FW1 271 aaPredicted RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 AGPAT5Q9NUQ2 364 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 ARHGEF40Q8TER5 1519 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 LRRC8EQ6NSJ5 796 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 SLC30A5Q8TAD4 765 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 COG4Q9H9E3 785 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 PSMC3IPQ9P2W1 217 aaPredicted RBP14.26□□□□□ -0.13
SF3A1-201ENST00000215793 TMEM253P0C7T8 217 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 KRT4P19013 534 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 SULT1E1P49888 294 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 FLOT2Q14254 428 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 DCAF4L1Q3SXM0 396 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 ZC3H12BQ5HYM0 836 aaKnown RBP14.26□□□□□ -0.13
SF3A1-201ENST00000215793 C16orf87Q6PH81 154 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 C16orf86Q6ZW13 317 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 PATL1Q86TB9 770 aaKnown RBP14.26□□□□□ -0.13
SF3A1-201ENST00000215793 SPATA2LQ8IUW3 424 aaPredicted RBP14.26□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF34Q8IZ26 560 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 NEU2Q9Y3R4 380 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 ANGPT2O15123 496 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 MAP3K10Q02779 954 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 KCNV2Q8TDN2 545 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 PRR12Q9ULL5 1215 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 SUFUQ9UMX1 484 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 RPA1P27694 616 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 DNAL1Q4LDG9 190 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 NUDT18Q6ZVK8 323 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 OR6J1Q8NGC5 347 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 TMEM143Q96AN5 459 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 VCPKMTQ9H867 229 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 PIDD1Q9HB75 910 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 DYRK4Q9NR20 520 aa14.26□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF185O15231 689 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 DYNC1I2Q13409 638 aaKnown RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 XRRA1Q6P2D8 792 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ELOA2Q8IYF1 753 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 RAB42Q8N4Z0 105 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 SCFD2Q8WU76 684 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 CPA5Q8WXQ8 436 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 PBXIP1Q96AQ6 731 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 IL18RAPO95256 599 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 CD4P01730 458 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ACTN3Q08043 901 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 STX3Q13277 289 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 INPP5AQ14642 412 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 PRUNE1Q86TP1 453 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF677Q86XU0 584 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 DCUN1D1Q96GG9 259 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 TSSK1BQ9BXA7 367 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 OSBPL8Q9BZF1 889 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ROPN1BQ9BZX4 212 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 TMEM117Q9H0C3 514 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ROPN1Q9HAT0 212 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 KLC4Q9NSK0 619 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 PAK5Q9P286 719 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 AFF4Q9UHB7 1163 aaKnown RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 PSMD14O00487 310 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 CYBBP04839 570 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 HIST1H2AGP0C0S8 130 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 PDHBP11177 359 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 HIST1H2ADP20671 130 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 RBBP7Q16576 425 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 AGBL2Q5U5Z8 902 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 TC2NQ8N9U0 490 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 HIST1H2AHQ96KK5 128 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 HIST1H2AJQ99878 128 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 H2AFJQ9BTM1 129 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 TMEM8AQ9HCN3 771 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 FAM47DPA6NHR8 397 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 TNPO2O14787 897 aaKnown RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 KCNQ2O43526 872 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ATP6V1E1P36543 226 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 GRIK1P39086 918 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF280CQ8ND82 737 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 SYN2Q92777 582 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-201ENST00000215793 ATXN7L3BQ96GX2 97 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 KATNAL1Q9BW62 490 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 RSAD1Q9HA92 442 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 FHOD1Q9Y613 1164 aa14.25□□□□□ -0.13
SF3A1-201ENST00000215793 GTPBP10A4D1E9 387 aaKnown RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF200P98182 395 aaPredicted RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 MS4A14Q96JA4 679 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 C9orf72Q96LT7 481 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 TRIM51Q9BSJ1 452 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 OSBPL1AQ9BXW6 950 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 USP15Q9Y4E8 981 aaPredicted RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 TULP4Q9NRJ4 1543 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 MAN1A2O60476 641 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 HMOX2P30519 316 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 ACADSBP45954 432 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 FXR2P51116 673 aaKnown RBP eCLIP14.24□□□□□ -0.132e-6■■□□□ 11.9
SF3A1-201ENST00000215793 EMC2Q15006 297 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 MFN1Q8IWA4 741 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 AGGF1Q8N302 714 aaeCLIP14.24□□□□□ -0.137e-6■■■■□ 19.5
SF3A1-201ENST00000215793 CCT8L2Q96SF2 557 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 PRMT1Q99873 361 aaKnown RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 NEUROG2Q9H2A3 272 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms