RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ALDH1A1P00352 501 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SPRP35270 261 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CEP78Q5JTW2 689 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 HECTD3Q5T447 861 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC28BQ9BUN5 200 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 RGL1Q9NZL6 768 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 GINS2Q9Y248 185 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TSC22D4Q9Y3Q8 395 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 VHLP40337 213 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 GTF2H3Q13889 308 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TAF2Q6P1X5 1199 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC80Q76M96 950 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 DCUN1D1Q96GG9 259 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CEP170P1Q96L14 293 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 UBE2TQ9NPD8 197 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 IARS2Q9NSE4 1012 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 WDR70Q9NW82 654 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 AMACRQ9UHK6 382 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 DPP7Q9UHL4 492 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 STON1Q9Y6Q2 735 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 A0A0G2JND7 137 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SRRM3A6NNA2 597 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CD3EAPO15446 510 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 FKBP6O75344 327 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ACSL3O95573 720 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 WARSP23381 471 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 RRM2P31350 389 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TTLL4Q14679 1199 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 BEND6Q5SZJ8 279 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TMCO4Q5TGY1 634 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TSHZ3Q63HK5 1081 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 C4orf50Q6ZRC1 276 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CYP4Z1Q86W10 505 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 OTULINQ96BN8 352 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 MKNK1Q9BUB5 465 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SERTAD1Q9UHV2 236 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 FEM1BQ9UK73 627 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 OVOS2A0A0G2JMS6 1433 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 MAP3K19Q56UN5 1328 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 C3orf70A6NLC5 250 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 PDXKO00764 312 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TBX3O15119 743 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TRIM24O15164 1050 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CYP2C8P10632 490 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 S100GP29377 79 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TYK2P29597 1187 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 PNPLA4P41247 253 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CACHD1Q5VU97 1274 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SETD9Q8NE22 299 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SENP7Q9BQF6 1050 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SETD1AO15047 1707 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CD4P01730 458 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ANXA6P08133 673 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 IL1RL1Q01638 556 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ADCK5Q3MIX3 580 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ARMC3Q5W041 872 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC137Q6PK04 289 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CHST3Q7LGC8 479 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SLC22A9Q8IVM8 553 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 SVOPQ8N4V2 548 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 DIS3LQ8TF46 1054 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 LPAR1Q92633 364 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 FAM149B1Q96BN6 582 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CATSPERBQ9H7T0 1116 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 MAGEB2O15479 319 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ALBP02768 609 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 STIP1P31948 543 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 IFNAR2P48551 515 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 AMPD2Q01433 879 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 PTGES3Q15185 160 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TSGA10IPQ3SY00 556 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TTC39BQ5VTQ0 682 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 RDM1Q8NG50 284 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 DLG3Q92796 817 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 CYFIP2Q96F07 1278 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 MLPHQ9BV36 600 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 STK33Q9BYT3 514 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 C20orf96Q9NUD7 363 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 IRAK4Q9NWZ3 460 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 RPL26L1Q9UNX3 145 aaKnown RBP6.37□□□□□ -1.39
VPS13D-201ENST00000011700 NRKQ7Z2Y5 1582 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ZBBXA8MT70 800 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 ADAMTS2O95450 1211 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 IL13P35225 146 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 FDFT1P37268 417 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 DAB2P98082 770 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 RBL2Q08999 1139 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 PDK1Q15118 436 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 PCBP1Q15365 356 aaKnown RBP eCLIP6.37□□□□□ -1.391e-7■■■■■ 26.9
VPS13D-201ENST00000011700 MAPK11Q15759 364 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TRIM16LQ309B1 348 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 P3H2Q8IVL5 708 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 KRT84Q9NSB2 600 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 TJP2Q9UDY2 1190 aa6.37□□□□□ -1.39
VPS13D-201ENST00000011700 NEURL4Q96JN8 1562 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 IL6P05231 212 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SAT1P21673 171 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 RAD23AP54725 363 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CDK17Q00537 523 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SP4Q02446 784 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms