RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 KLF1Q13351 362 aaPredicted RBP11.4□□□□□ -0.58
USP28-201ENST00000003302 SEL1L2Q5TEA6 688 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 MIS18BP1Q6P0N0 1132 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 ECHDC2Q86YB7 292 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 UBL4BQ8N7F7 174 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 NKX1-2Q9UD57 310 aaPredicted RBP11.4□□□□□ -0.58
USP28-201ENST00000003302 FAM187AA6NFU0 413 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 F8VP50 259 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 MAP3K13O43283 966 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 ECEL1O95672 775 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 CST3P01034 146 aaPredicted RBP11.4□□□□□ -0.58
USP28-201ENST00000003302 BRAFP15056 766 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 MAPK4P31152 587 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 NOP14P78316 857 aaKnown RBP11.4□□□□□ -0.58
USP28-201ENST00000003302 SMTNL2Q2TAL5 461 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 CCDC50Q8IVM0 306 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 FSCN2O14926 492 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 SSR1P43307 286 aaKnown RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 DRG2P55039 364 aaKnown RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 RWDD2BP57060 319 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 PREPLQ4J6C6 727 aaPredicted RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 PLEKHG4Q58EX7 1191 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 KCNT1Q5JUK3 1230 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 CRELD2Q6UXH1 353 aaPredicted RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 KRT27Q7Z3Y8 459 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 MCOLN2Q8IZK6 566 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP28-201ENST00000003302 TRIM56Q9BRZ2 755 aaKnown RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 GABBR1Q9UBS5 961 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 HNRNPDLO14979 420 aaKnown RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 CHUKO15111 745 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 APBA3O96018 575 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 TNFSF9P41273 254 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 HADHBP55084 474 aaKnown RBP11.39□□□□□ -0.59
USP28-201ENST00000003302 GDF10P55107 478 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 SNCBQ16143 134 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 WDR72Q3MJ13 1102 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 MSS51Q4VC12 460 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 ACCSQ96QU6 501 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 LRRC19Q9H756 370 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 SEL1LQ9UBV2 794 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 GOLGA8RI6L899 631 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 MAP3K6O95382 1288 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 ATP4AP20648 1035 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 KRT39Q6A163 491 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 MICALCLQ6ZW33 695 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 DCLK3Q9C098 648 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 TCRBV7S3A2A0A539 114 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 TTC4O95801 387 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 GJB1P08034 283 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 ADCY8P40145 1251 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 NCKAP1LP55160 1127 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 CLEC16AQ2KHT3 1053 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 ACAD10Q6JQN1 1059 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 SWSAP1Q6NVH7 229 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 FBXL13Q8NEE6 735 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 RMDN3Q96TC7 470 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 NUB1Q9Y5A7 615 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 UBIAD1Q9Y5Z9 338 aa11.39□□□□□ -0.59
USP28-201ENST00000003302 WNT10BO00744 389 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CYP24A1Q07973 514 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 MTMR2Q13614 643 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 BAATQ14032 418 aaPredicted RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 TAF5Q15542 800 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 HOOK3Q86VS8 718 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ANKMY2Q8IV38 441 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 KIAA0319LQ8IZA0 1049 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ATG4CQ96DT6 458 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ZNF570Q96NI8 536 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 WDR91A4D1P6 747 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CLSTN1O94985 981 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CD48P09326 243 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 TMED2Q15363 201 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 PKN2Q16513 984 aaKnown RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 TMEM270Q6UE05 265 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 NLGN1Q8N2Q7 840 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 DYDC1Q8WWB3 177 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 RPS6KC1Q96S38 1066 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 GMLQ99445 158 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 TMEM121Q9BTD3 319 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ECT2Q9H8V3 914 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ENTPD3O75355 529 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 PDE6CP51160 858 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 SLC1A5Q15758 541 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 P3H1Q32P28 736 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 WLSQ5T9L3 541 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CYP4A22Q5TCH4 519 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ANKRD22Q5VYY1 191 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CEP170P1Q96L14 293 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 EURLQ9NYK6 297 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 POC1B-GALNT4F8VUJ3 575 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 THAP12O43422 761 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 CSDE1O75534 798 aaKnown RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 ICAM1P05362 532 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 ACO1P21399 889 aaKnown RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 PAX7P23759 505 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 EIF3BP55884 814 aaKnown RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 DYNLT1P63172 113 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 NBPF20Q3BBV1 942 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 TLDC1Q6P9B6 456 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms