RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HAPLN2Q9GZV7 340 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 KIAA1586Q9HCI6 787 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 MARCH5Q9NX47 278 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 ADAM28Q9UKQ2 775 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 C2CD2Q9Y426 696 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 SF3B1O75533 1304 aaKnown RBP eCLIP19.91■□□□□ 0.783e-9■■■■■ 164.7
CLN3-259ENST00000637551 IL18RAPO95256 599 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 MYBP10242 640 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 ADSSP30520 456 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 DPYDQ12882 1025 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 SNW1Q13573 536 aaKnown RBP19.9■□□□□ 0.78
CLN3-259ENST00000637551 CTC1Q2NKJ3 1217 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 TMEM31Q5JXX7 168 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 PDXDC1Q6P996 788 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 HS2ST1Q7LGA3 356 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 MRPL43Q8N983 215 aaKnown RBP19.9■□□□□ 0.78
CLN3-259ENST00000637551 POMGNT1Q8WZA1 660 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 IPO9Q96P70 1041 aaKnown RBP19.9■□□□□ 0.78
CLN3-259ENST00000637551 TCF25Q9BQ70 676 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 HERC2P3Q9BVR0 1158 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 RPF1Q9H9Y2 349 aaKnown RBP19.9■□□□□ 0.78
CLN3-259ENST00000637551 KLK14Q9P0G3 267 aa19.9■□□□□ 0.78
CLN3-259ENST00000637551 UBQLN1Q9UMX0 589 aaKnown RBP19.9■□□□□ 0.78
CLN3-259ENST00000637551 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.89■□□□□ 0.77
CLN3-259ENST00000637551 SRGAP2BP0DMP2 458 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 OR1G1P47890 313 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 ZBTB6Q15916 424 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 ENOX2Q16206 610 aaKnown RBP19.89■□□□□ 0.77
CLN3-259ENST00000637551 TCEAL5Q5H9L2 206 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 DCLRE1AQ6PJP8 1040 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 TMEM173Q86WV6 379 aaPredicted RBP19.89■□□□□ 0.77
CLN3-259ENST00000637551 VPS52Q8N1B4 723 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 EFHBQ8N7U6 833 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 HLA-CQ95604 372 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 GSDMAQ96QA5 445 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 BLZF1Q9H2G9 400 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 ENTPD7Q9NQZ7 604 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-259ENST00000637551 RMND1Q9NWS8 449 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 TBC1D7Q9P0N9 293 aa19.89■□□□□ 0.77
CLN3-259ENST00000637551 ANKRD63C9JTQ0 380 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 TRAPPC3O43617 180 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 RPN1P04843 607 aaKnown RBP19.88■□□□□ 0.77
CLN3-259ENST00000637551 CXCL8P10145 99 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 LRPAP1P30533 357 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 PBX3P40426 434 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 UBE2HP62256 183 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 KCNA1Q09470 495 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 MYBPC2Q14324 1141 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 UPP1Q16831 310 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 TMEM184AQ6ZMB5 413 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 TMC7Q7Z402 723 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 PPFIBP1Q86W92 1011 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 SPATA20Q8TB22 786 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 SCFD1Q8WVM8 642 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 CHST7Q9NS84 486 aa19.88■□□□□ 0.77
CLN3-259ENST00000637551 EXTL3O43909 919 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 ERVFC1P60507 584 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 DSG1Q02413 1049 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 SURF1Q15526 300 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 DUSP6Q16828 381 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 KNOP1Q1ED39 458 aaKnown RBP19.87■□□□□ 0.77
CLN3-259ENST00000637551 USP41Q3LFD5 358 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 PUS10Q3MIT2 529 aaKnown RBP19.87■□□□□ 0.77
CLN3-259ENST00000637551 KMT5BQ4FZB7 885 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 COBLL1Q53SF7 1204 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 FUT10Q6P4F1 479 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 BRSK2Q8IWQ3 736 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 BCL7CQ8WUZ0 217 aaPredicted RBP19.87■□□□□ 0.77
CLN3-259ENST00000637551 FBXL18Q96ME1 805 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 C11orf16Q9NQ32 467 aa19.87■□□□□ 0.77
CLN3-259ENST00000637551 MRPL17Q9NRX2 175 aaKnown RBP19.87■□□□□ 0.77
CLN3-259ENST00000637551 PRG3Q9Y2Y8 225 aaPredicted RBP19.87■□□□□ 0.77
CLN3-259ENST00000637551 C2orf71A6NGG8 1288 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 NT5C1B-RDH14C9J2C7 533 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 KINO60870 393 aaKnown RBP19.86■□□□□ 0.77
CLN3-259ENST00000637551 GPR37L1O60883 481 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 PRPF6O94906 941 aaKnown RBP19.86■□□□□ 0.77
CLN3-259ENST00000637551 SMC2O95347 1197 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 URODP06132 367 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 HARSP12081 509 aaKnown RBP19.86■□□□□ 0.77
CLN3-259ENST00000637551 IRS1P35568 1242 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 GLUD2P49448 558 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 OSTNP61366 133 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 HYAL1Q12794 435 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 PTPN14Q15678 1187 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 ARMCX5Q6P1M9 558 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 SLC9A9Q8IVB4 645 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 GPD1LQ8N335 351 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 MICALL1Q8N3F8 863 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 MICAL1Q8TDZ2 1067 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 ZMAT2Q96NC0 199 aaKnown RBP19.86■□□□□ 0.77
CLN3-259ENST00000637551 VN1R3Q9BXE9 311 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 EMILIN2Q9BXX0 1053 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 FGFBP2Q9BYJ0 223 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 TLE6Q9H808 572 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 FNIP2Q9P278 1114 aa19.86■□□□□ 0.77
CLN3-259ENST00000637551 PDXKO00764 312 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 MEFVO15553 781 aaPredicted RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 LILRB3O75022 631 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms