RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SPATA2LQ8IUW3 424 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 SLITRK4Q8IW52 837 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ZFPM1Q8IX07 1006 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CCDC65Q8IXS2 484 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ESX1Q8N693 406 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 USP38Q8NB14 1042 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ANKRD52Q8NB46 1076 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TNIP2Q8NFZ5 429 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 OR6P1Q8NGX9 317 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 RASSF8Q8NHQ8 419 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 OTUD7AQ8TE49 926 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 DENND1AQ8TEH3 1009 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 HDAC7Q8WUI4 952 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 KISS1RQ969F8 398 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 SYTL4Q96C24 671 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 EXOC2Q96KP1 924 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 RHOVQ96L33 236 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 PIGSQ96S52 555 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TBCBQ99426 244 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TTC1Q99614 292 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 SLF1Q9BQI6 1058 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 STK31Q9BXU1 1019 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 NCOR1P1Q9H4R4 102 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 XAB2Q9HCS7 855 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 NMRK2Q9NPI5 230 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ITM2CQ9NQX7 267 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GPRC5BQ9NZH0 403 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 SUCOQ9UBS9 1254 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 CDC23Q9UJX2 597 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 MTUS1Q9ULD2 1270 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 HPCAL4Q9UM19 191 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 C19orf53Q9UNZ5 99 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 CNPY2Q9Y2B0 182 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ZNF711Q9Y462 761 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TACC3Q9Y6A5 838 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ZFP37Q9Y6Q3 630 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 FANCIQ9NVI1 1328 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CYP2D7A0A087X1C5 515 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 LRRC72A6NJI9 287 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 A6NLC8 198 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 HNRNPCL2B2RXH8 293 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TISP43B9A030 160 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 B9A039 149 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 AP3B1O00203 1094 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CACNB4O00305 520 aaPredicted RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 NEMP1O14524 444 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CAPN9O14815 690 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 STX6O43752 255 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 NMT2O60551 498 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TSPAN3O60637 253 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 HNRNPCL1O60812 293 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 SRGAP2O75044 1071 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TSC22D2O75157 780 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 RTN2O75298 545 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TBCAO75347 108 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 PALMO75781 387 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 STARD3NLO95772 234 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ZBED1O96006 694 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 POU2F2P09086 479 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 DHRS4L1P0CG22 281 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 MYCLP12524 364 aaPredicted RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 PNLIPP16233 465 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ZNF20P17024 532 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 HSPA6P17066 643 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 FBLN1P23142 703 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 RDXP35241 583 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 PPM1AP35813 382 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ACVRL1P37023 503 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 LIFRP42702 1097 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ID4P47928 161 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CTCFP49711 727 aaPredicted RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 YARSP54577 528 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 CAP1Q01518 475 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 GBE1Q04446 702 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ZBTB16Q05516 673 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 KLHL30Q0D2K2 578 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CCDC173Q0VFZ6 552 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TRDNQ13061 729 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 BLMHQ13867 455 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 PCBP2Q15366 365 aaKnown RBP eCLIP3.31□□□□□ -1.88
VIM-210ENST00000637053 CCDC152Q4G0S7 254 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ZNF362Q5T0B9 420 aaPredicted RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 MEX3CQ5U5Q3 659 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 FBXW10Q5XX13 1052 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CPZQ66K79 652 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 ANGPTL8Q6UXH0 198 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CEP128Q6ZU80 1094 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 PLEKHM3Q6ZWE6 761 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 KRT74Q7RTS7 529 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 TMC6Q7Z403 805 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CCDC84Q86UT8 332 aaPredicted RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 HEATR4Q86WZ0 1026 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 LURAP1LQ8IV03 231 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 FAM178BQ8IXR5 827 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 CMTR2Q8IYT2 770 aaKnown RBP3.31□□□□□ -1.88
VIM-210ENST00000637053 NUP93Q8N1F7 819 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 OR2C3Q8N628 320 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 SPERTQ8NA61 448 aa3.31□□□□□ -1.88
VIM-210ENST00000637053 AVL9Q8NBF6 648 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms