RNA–Protein interactions for RNA: ENST00000635997.1

NEDD4L-238, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 5 BASIC

Gene NEDD4L, Length 4,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-238	ENST00000635997	SLC51A	Q86UW1	340 aa		15.22	■□□□□ 0.03
NEDD4L-238	ENST00000635997	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	15.22	■□□□□ 0.03	6e-22	■□□□□ 9.4
NEDD4L-238	ENST00000635997	ELMO3	Q96BJ8	720 aa		15.22	■□□□□ 0.03
NEDD4L-238	ENST00000635997	IFT122	Q9HBG6	1241 aa		15.22	■□□□□ 0.03
NEDD4L-238	ENST00000635997	ABCB6	Q9NP58	842 aa		15.22	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CLNS1A	P54105	237 aa	Known RBP	15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	LMNB2	Q03252	620 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CAPN7	Q9Y6W3	813 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997		A0A1B0GTH6	734 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	WDR91	A4D1P6	747 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CCL5	P13501	91 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	SCP2	P22307	547 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	SREBF1	P36956	1147 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	PTGIS	Q16647	500 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CROCCP2	Q86T23	111 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CBWD2	Q8IUF1	395 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	ARHGEF2	Q92974	986 aa	Known RBP	15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CBWD1	Q9BRT8	395 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	SPON2	Q9BUD6	331 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	DHX35	Q9H5Z1	703 aa	Known RBP	15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	HAUS2	Q9NVX0	235 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CAPN11	Q9UMQ6	739 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	GPR182	O15218	404 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	CP	P00450	1065 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	GSTA1	P08263	222 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	GSTA2	P09210	222 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	AMHR2	Q16671	573 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	ATF7IP2	Q5U623	682 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	NXN	Q6DKJ4	435 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	SYT2	Q8N9I0	419 aa	Predicted RBP	15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	EXOC4	Q96A65	974 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	PAWR	Q96IZ0	340 aa	Known RBP	15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	FMO2	Q99518	471 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	AGXT2	Q9BYV1	514 aa		15.21	■□□□□ 0.03
NEDD4L-238	ENST00000635997	EIF3CL	B5ME19	914 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	PPP1R3G	B7ZBB8	358 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	TBXAS1	P24557	533 aa	Predicted RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	EPHB1	P54762	984 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ORC1	Q13415	861 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	LY6K	Q17RY6	165 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	RIOX2	Q8IUF8	465 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	BBS5	Q8N3I7	341 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	PRPF31	Q8WWY3	499 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	EIF3C	Q99613	913 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	FAM86B1	E9PN63	330 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	TBC1D12	O60347	775 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	FAM86B2	P0C5J1	330 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	BRD2	P25440	801 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	HIRA	P54198	1017 aa	Predicted RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	GAK	O14976	1311 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ATMIN	O43313	823 aa	Predicted RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	VTN	P04004	478 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	GHR	P10912	638 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ITGA4	P13612	1032 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	MAGEA9	P43362	315 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	TMED2	Q15363	201 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	GKAP1	Q5VSY0	366 aa	Predicted RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	RAD9B	Q6WBX8	426 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ZC3H18	Q86VM9	953 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	C1orf54	Q8WWF1	131 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	HIPK3	Q9H422	1215 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	FAM114A2	Q9NRY5	505 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ABCF3	Q9NUQ8	709 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997		A0A1W2PQC6	194 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	FRMD3	A2A2Y4	597 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	TLL1	O43897	1013 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	HLA-DRA	P01903	254 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ATP1A1	P05023	1023 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	RPLP2	P05387	115 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	CCT5	P48643	541 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	NUMB	P49757	651 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	PGBD3	Q8N328	593 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	POP1	Q99575	1024 aa	Known RBP	15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ADAM33	Q9BZ11	813 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	CYP26B1	Q9NR63	512 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	APEX2	Q9UBZ4	518 aa		15.2	■□□□□ 0.02
NEDD4L-238	ENST00000635997	COL16A1	Q07092	1604 aa	Predicted RBP	15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	RPTOR	Q8N122	1335 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	MAP1B	P46821	2468 aa	Known RBP	15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	GALC	P54803	685 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ARL13B	Q3SXY8	428 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	TRAPPC12	Q8WVT3	735 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	CDKL2	Q92772	493 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	NCAPG	Q9BPX3	1015 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	DLG5	Q8TDM6	1919 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	ZNF185	O15231	689 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	SLC10A3	P09131	477 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	KLRC1	P26715	233 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	GDAP1	Q8TB36	358 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	SETD4	Q9NVD3	440 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	SMARCAL1	Q9NZC9	954 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	URB1	O60287	2271 aa	Known RBP	15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	CIC	Q96RK0	1608 aa	Predicted RBP	15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	RNF40	O75150	1001 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	EPHB4	P54760	987 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	PRPSAP1	Q14558	356 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	NR1I3	Q14994	352 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	E4F1	Q66K89	784 aa	Predicted RBP	15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	PDIK1L	Q8N165	341 aa		15.19	■□□□□ 0.02
NEDD4L-238	ENST00000635997	BBOF1	Q8ND07	529 aa		15.19	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms