RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 TNFRSF8P28908 595 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 ADCYAP1R1P41586 468 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CLCN3P51790 818 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 TNNC1P63316 161 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CUL2Q13617 745 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 ACAD10Q6JQN1 1059 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 ZBTB33Q86T24 672 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 AFG1LQ8WV93 481 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 PTPN18Q99952 460 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 GTF3C4Q9UKN8 822 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 COG5Q9UP83 839 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CEP104O60308 925 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 PHACTR2O75167 634 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 CLTAP09496 248 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 HOXD8P13378 290 aaPredicted RBP23.68■■□□□ 1.38
PNKP-220ENST00000627232 PHKA2P46019 1235 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 MBTD1Q05BQ5 628 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 FAM187BQ17R55 369 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 CLEC16AQ2KHT3 1053 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 GJC2Q5T442 439 aaPredicted RBP23.68■■□□□ 1.38
PNKP-220ENST00000627232 ATF7IP2Q5U623 682 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 OR5B17Q8NGF7 314 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 FAM84AQ96KN4 292 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 NLRP4Q96MN2 994 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.68■■□□□ 1.383e-9■■■□□ 18.5
PNKP-220ENST00000627232 UBXN6Q9BZV1 441 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 ABHD16BQ9H3Z7 469 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 ACP6Q9NPH0 428 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 PRMT7Q9NVM4 692 aaPredicted RBP23.68■■□□□ 1.38
PNKP-220ENST00000627232 SLC5A4Q9NY91 659 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 TTC7AQ9ULT0 858 aaPredicted RBP23.68■■□□□ 1.38
PNKP-220ENST00000627232 CNTN6Q9UQ52 1028 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 TNFSF13BQ9Y275 285 aa23.68■■□□□ 1.38
PNKP-220ENST00000627232 ANK1P16157 1881 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 TRPM7Q96QT4 1865 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 PGRMC1O00264 195 aaKnown RBP23.67■■□□□ 1.38
PNKP-220ENST00000627232 ACO1P21399 889 aaKnown RBP23.67■■□□□ 1.38
PNKP-220ENST00000627232 TNFSF9P41273 254 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 DUSP28Q4G0W2 176 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 TINF2Q9BSI4 451 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 C16orf70Q9BSU1 422 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 APOBEC3GQ9HC16 384 aaKnown RBP23.67■■□□□ 1.38
PNKP-220ENST00000627232 STIM2Q9P246 746 aa23.67■■□□□ 1.38
PNKP-220ENST00000627232 MIF4GDA9UHW6 222 aaKnown RBP23.66■■□□□ 1.38
PNKP-220ENST00000627232 INO80B-WBP1J3KQ70 363 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 DDX3YO15523 660 aaKnown RBP23.66■■□□□ 1.38
PNKP-220ENST00000627232 NOP14P78316 857 aaKnown RBP23.66■■□□□ 1.38
PNKP-220ENST00000627232 IRF5Q13568 498 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 NCOA4Q13772 614 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 SEZ6Q53EL9 994 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 IQSEC1Q6DN90 963 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 RPS6KC1Q96S38 1066 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 IMPG2Q9BZV3 1241 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 INO80BQ9C086 356 aaPredicted RBP23.66■■□□□ 1.38
PNKP-220ENST00000627232 UVRAGQ9P2Y5 699 aa23.66■■□□□ 1.38
PNKP-220ENST00000627232 DMGDHQ9UI17 866 aaKnown RBP23.66■■□□□ 1.38
PNKP-220ENST00000627232 CCDC188H7C350 402 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 CLUL1Q15846 466 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 SPOPLQ6IQ16 392 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 TRIM72Q6ZMU5 477 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 ELMO3Q96BJ8 720 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 CARD9Q9H257 536 aa23.65■■□□□ 1.38
PNKP-220ENST00000627232 ASS1P00966 412 aaKnown RBP23.64■■□□□ 1.38
PNKP-220ENST00000627232 GJB1P08034 283 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 UNGP13051 313 aaPredicted RBP23.64■■□□□ 1.38
PNKP-220ENST00000627232 TMOD1P28289 359 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 IGBP1P78318 339 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 POU5F1Q01860 360 aaKnown RBP23.64■■□□□ 1.38
PNKP-220ENST00000627232 ACVR2BQ13705 512 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 CASP8Q14790 479 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 DUOXA2Q1HG44 320 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 ZNF568Q3ZCX4 644 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 ZNF653Q96CK0 615 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 TRIM11Q96F44 468 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 VIPAS39Q9H9C1 493 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 ZCCHC17Q9NP64 241 aaKnown RBP23.64■■□□□ 1.38
PNKP-220ENST00000627232 NOC2LQ9Y3T9 749 aaKnown RBP23.64■■□□□ 1.38
PNKP-220ENST00000627232 NUB1Q9Y5A7 615 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 ALG6Q9Y672 507 aa23.64■■□□□ 1.38
PNKP-220ENST00000627232 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.64■■□□□ 1.37
PNKP-220ENST00000627232 H3BRB1 525 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 B4GALT4O60513 344 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 IL18RAPO95256 599 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 SMPD1P17405 629 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 PPP1R2P3Q6NXS1 205 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 UBR7Q8N806 425 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 HDAC7Q8WUI4 952 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 ACBD3Q9H3P7 528 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 TUT1Q9H6E5 874 aaKnown RBP23.64■■□□□ 1.37
PNKP-220ENST00000627232 IFT122Q9HBG6 1241 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 PCDHB4Q9Y5E5 795 aa23.64■■□□□ 1.37
PNKP-220ENST00000627232 ZMYND10O75800 440 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 MMP3P08254 477 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 HOXC6P09630 235 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 MYBL1P10243 752 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 TNFAIP2Q03169 654 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 GPS2Q13227 327 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 TMEM132AQ24JP5 1023 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 SGSM1Q2NKQ1 1148 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 EEF1DP3Q658K8 133 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms